Miyakogusa Predicted Gene

Lj1g3v3150030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3150030.1 Non Chatacterized Hit- tr|C5X8F5|C5X8F5_SORBI
Putative uncharacterized protein Sb02g032890 OS=Sorghu,61.9,8e-19,no
description,Beta-grasp domain; seg,NULL; MoaD/ThiS,Molybdopterin
synthase/thiamin biosynthesis su,CUFF.30135.1
         (73 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61113.1 | Symbols:  | Ubiquitin related modifier 1 | chr3:22...   100   1e-22
AT2G45695.1 | Symbols:  | Ubiquitin related modifier 1 | chr2:18...   100   2e-22

>AT3G61113.1 | Symbols:  | Ubiquitin related modifier 1 |
          chr3:22614582-22615415 REVERSE LENGTH=99
          Length = 99

 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/59 (83%), Positives = 50/59 (84%)

Query: 15 CDSKKIHNVNVEQQNGEDKLTMKGLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCD 73
          CDS KIH VN+   N  D LTMK LLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCD
Sbjct: 15 CDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCD 73


>AT2G45695.1 | Symbols:  | Ubiquitin related modifier 1 |
          chr2:18826043-18826744 FORWARD LENGTH=101
          Length = 101

 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/61 (81%), Positives = 52/61 (85%), Gaps = 2/61 (3%)

Query: 15 CDSKKIHNVNVEQQNGEDK--LTMKGLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDC 72
          CDS+KIH VNV+  NG D    TMK LLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDC
Sbjct: 15 CDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDC 74

Query: 73 D 73
          D
Sbjct: 75 D 75