Miyakogusa Predicted Gene

Lj1g3v3138970.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3138970.1 Non Chatacterized Hit- tr|I1P6A0|I1P6A0_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,55.81,1e-18,seg,NULL; RING FINGER PROTEIN,NULL,CUFF.30126.1
         (419 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13250.1 | Symbols:  | RING finger protein | chr5:4234486-424...   157   2e-38
AT1G28080.1 | Symbols:  | RING finger protein | chr1:9789826-979...    91   1e-18
AT1G06770.2 | Symbols: DRIP1 | DREB2A-interacting protein 1 | ch...    70   3e-12
AT1G06770.1 | Symbols: DRIP1 | DREB2A-interacting protein 1 | ch...    69   5e-12
AT2G30580.1 | Symbols: DRIP2 | DREB2A-interacting protein 2 | ch...    68   1e-11

>AT5G13250.1 | Symbols:  | RING finger protein |
           chr5:4234486-4241615 FORWARD LENGTH=387
          Length = 387

 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 96/134 (71%), Gaps = 9/134 (6%)

Query: 293 VAGPSSDITVRVVDPPKRPHSGIWFMLQASQNQSKEPFLPQIPKNYLRIKDGRMTVRXXX 352
           VAGPSS  ++RV+DPP+RPHSGIWF+LQASQNQ+ EPFLPQIPK+YLRIKDG+MTVR   
Sbjct: 256 VAGPSS--SLRVIDPPRRPHSGIWFLLQASQNQTVEPFLPQIPKSYLRIKDGKMTVRLLM 313

Query: 353 X-XXXXXXXXXXXXXIEITCRGQQLLPFLTLQHVRDNIWT-QRDTTR-----PLLSDSST 405
                          +EI CRGQ+L P LTLQHVRD IW   RDT+       LL +SST
Sbjct: 314 KYLVNKLRLEHESQQVEIRCRGQELEPVLTLQHVRDAIWRGSRDTSSLSQNITLLPNSST 373

Query: 406 TDHVMVLHYGRATA 419
           +DH+MVLHYGR  +
Sbjct: 374 SDHLMVLHYGRTIS 387


>AT1G28080.1 | Symbols:  | RING finger protein |
           chr1:9789826-9790918 FORWARD LENGTH=291
          Length = 291

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 50/56 (89%), Gaps = 2/56 (3%)

Query: 294 AGPSSDITVRVVDPPKRPHSGIWFMLQASQNQSKEPFLPQIPKNYLRIKDGRMTVR 349
           AGPSS+   RV+DPP+RPHSG+WF+LQASQ Q +EPFLPQ+ K+YLRIKDGR+TVR
Sbjct: 218 AGPSSEF--RVLDPPRRPHSGLWFLLQASQFQEREPFLPQVNKSYLRIKDGRITVR 271


>AT1G06770.2 | Symbols: DRIP1 | DREB2A-interacting protein 1 |
           chr1:2079222-2080658 REVERSE LENGTH=307
          Length = 307

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 309 KRPHSGIWFMLQASQNQSKEPFLPQIPKNYLRIKDGRMTVRXXXXXXXXXXXXXXXXXIE 368
           +R +  +WF L AS +Q     LPQIP N+LRI+DG  TV                  IE
Sbjct: 191 ERRNGPVWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFIQKYLMRKLDLESENEIE 250

Query: 369 ITCRGQQLLPFLTLQHVRDNIWTQRDTTR---PLLSDSSTTDHVMVLHYGR 416
           I C G+ ++P LTL ++ D +W Q+ +       L  SS  D  MVL Y R
Sbjct: 251 IKCMGEAVIPTLTLYNLVD-LWLQKSSNHQRFAALVGSSAKDFTMVLVYAR 300


>AT1G06770.1 | Symbols: DRIP1 | DREB2A-interacting protein 1 |
           chr1:2079222-2081707 REVERSE LENGTH=421
          Length = 421

 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 309 KRPHSGIWFMLQASQNQSKEPFLPQIPKNYLRIKDGRMTVRXXXXXXXXXXXXXXXXXIE 368
           +R +  +WF L AS +Q     LPQIP N+LRI+DG  TV                  IE
Sbjct: 305 ERRNGPVWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFIQKYLMRKLDLESENEIE 364

Query: 369 ITCRGQQLLPFLTLQHVRDNIWTQRDTTR---PLLSDSSTTDHVMVLHYGR 416
           I C G+ ++P LTL ++ D +W Q+ +       L  SS  D  MVL Y R
Sbjct: 365 IKCMGEAVIPTLTLYNLVD-LWLQKSSNHQRFAALVGSSAKDFTMVLVYAR 414


>AT2G30580.1 | Symbols: DRIP2 | DREB2A-interacting protein 2 |
           chr2:13026444-13030363 FORWARD LENGTH=420
          Length = 420

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 4/111 (3%)

Query: 309 KRPHSGIWFMLQASQNQSKEPFLPQIPKNYLRIKDGRMTVRXXXXXXXXXXXXXXXXXIE 368
           +R +  +WF L AS NQ  E  LPQIP NYLRI+DG + V                  +E
Sbjct: 304 ERRNGHVWFSLVASSNQEGEASLPQIPANYLRIRDGNIPVSFIQKYLMRKLDLKSEDEVE 363

Query: 369 ITCRGQQLLPFLTLQHVRDNIWTQRDTTRPLLS---DSSTTDHVMVLHYGR 416
           ITC G+ ++P L L  + D +W +  +    ++    SS  + VMVL Y R
Sbjct: 364 ITCMGEPVIPTLQLHSLVD-LWLETTSKHQRVAASIGSSAKEFVMVLVYSR 413