Miyakogusa Predicted Gene
- Lj1g3v3137850.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3137850.1 Non Chatacterized Hit- tr|A9NXN9|A9NXN9_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,40.6,1e-18,coiled-coil,NULL; seg,NULL; MYB_LIKE,Myb-like domain;
Myb_DNA-bind_4,NULL,CUFF.30114.1
(330 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33550.1 | Symbols: | Homeodomain-like superfamily protein |... 284 7e-77
AT4G31270.1 | Symbols: | sequence-specific DNA binding transcri... 73 3e-13
AT2G35640.1 | Symbols: | Homeodomain-like superfamily protein |... 64 1e-10
AT1G31310.1 | Symbols: | hydroxyproline-rich glycoprotein famil... 57 1e-08
AT5G51800.1 | Symbols: | Protein kinase superfamily protein | c... 51 1e-06
AT3G10000.1 | Symbols: EDA31 | Homeodomain-like superfamily prot... 51 1e-06
AT1G33240.1 | Symbols: AT-GTL1, AT-GTL2, GTL1 | GT-2-like 1 | ch... 49 6e-06
>AT2G33550.1 | Symbols: | Homeodomain-like superfamily protein |
chr2:14210180-14211487 REVERSE LENGTH=314
Length = 314
Score = 284 bits (726), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 167/329 (50%), Positives = 208/329 (63%), Gaps = 43/329 (13%)
Query: 18 IDGAVNGSPPFAAASDER-PTARLPRWTRQEILVLIQGKADAESRFKPGRAAGSAFGSS- 75
+DG N S P D+ TARLPRWTRQEILVLIQGK AE+R + GRAAG A GS
Sbjct: 13 VDGGENSSAPSNDGGDDGVKTARLPRWTRQEILVLIQGKRVAENRVRRGRAAGMALGSGQ 72
Query: 76 -EPKWALVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESSVKDETESFWLMRNDLR 134
EPKWA VSSYCK+HGVNR PVQCRKRWSNLAGDYKKIKEWES +K+ETES+W+MRND+R
Sbjct: 73 MEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIKEETESYWVMRNDVR 132
Query: 135 RERKLPGYFDREVYXXXXXXXXXXXXXXXXXIEMAPEAVAREEEVHIYDSNRRVAGEDGL 194
RE+KLPG+FD+EVY + P AV + A ++GL
Sbjct: 133 REKKLPGFFDKEVYDIVDGG-------------VIPPAVP------VLSLGLAPASDEGL 173
Query: 195 FSDCEKDEVLASVKSV-----VAPVPISEKQYLPLLRGCQVESNGQGTPNEKQP-ASNPE 248
SD ++ E + S V V EKQ C + QG EKQP A+N E
Sbjct: 174 LSDLDRRESPEKLNSTPVAKSVTDVIDKEKQ-----EACVAD---QGRVKEKQPEAANVE 225
Query: 249 VGSTSQGERKRKRLA-------TDAAEEETLQTQLIDVLEKNGKMLRDQLEAQNMNFQLD 301
GSTSQ ERKRKR + + E + +Q QLI++LE+NG++L QLE QN+N +LD
Sbjct: 226 GGSTSQEERKRKRTSFGEKEEEEEEGETKKMQNQLIEILERNGQLLAAQLEVQNLNLKLD 285
Query: 302 RQHQKDTASSIIAVLDKLADALGRIADKL 330
R+ +KD S++AVL+KLADA+ +IADK+
Sbjct: 286 REQRKDHGDSLVAVLNKLADAVAKIADKM 314
>AT4G31270.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr4:15183291-15184503 REVERSE
LENGTH=294
Length = 294
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 41 PRWTRQEILVLIQGKADAESRFKPGRAAGSAFGSSEPKWALVSSYCKKHGVNREPVQCRK 100
P W ++ LVL+ A E A S SS KW +++ C V+R QCR+
Sbjct: 17 PEWAVKDCLVLVNEIAAVE-------ADCSNALSSFQKWTMITENCNALDVSRNLNQCRR 69
Query: 101 RWSNLAGDYKKIKEWESSVKDETESFWLMRNDLRRERKLPGYFDREVY 148
+W +L DY +IK+WES + S+W + +D R+ LPG D E++
Sbjct: 70 KWDSLMSDYNQIKKWESQYRGTGRSYWSLSSDKRKLLNLPGDIDIELF 117
>AT2G35640.1 | Symbols: | Homeodomain-like superfamily protein |
chr2:14982835-14984182 FORWARD LENGTH=340
Length = 340
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 43 WTRQEILVLIQGK-ADAESRFKPGRAAGSAFGSSEP---KWALVSSYCKKHGVNREPVQC 98
WT E LVLI+ K D + R + R+ G ++P +W + YC + G R QC
Sbjct: 22 WTVSETLVLIEAKKMDDQRRVR--RSEKQPEGRNKPAELRWKWIEEYCWRRGCYRNQNQC 79
Query: 99 RKRWSNLAGDYKKIKEWESSVKDE------TESFWLMRNDLRRERKLPGYFDREVY 148
+W NL DYKKI+E+E S + + S+W M R+E+ LP ++Y
Sbjct: 80 NDKWDNLMRDYKKIREYERSRVESSFNTVTSSSYWKMDKTERKEKNLPSNMLPQIY 135
>AT1G31310.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr1:11198565-11200025 REVERSE LENGTH=383
Length = 383
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 25/131 (19%)
Query: 43 WTRQEILVLIQGKADAESRFK------PGRAAGSAFGSSEP---KWALVSSYCKKHGVNR 93
WT E +VLI+ K + R P S++P +W + YC + G R
Sbjct: 19 WTLNETMVLIEAKRMDDERRMRRSIGLPPPEQQQDIRSNKPAELRWKWIEDYCWRKGCMR 78
Query: 94 EPVQCRKRWSNLAGDYKKIKEWE----------------SSVKDETESFWLMRNDLRRER 137
QC +W NL DYKK++E+E S+ ET S+W M R+ER
Sbjct: 79 SQNQCNDKWDNLMRDYKKVREYERRRVESSITAGESSSSSAPAGETASYWKMEKSERKER 138
Query: 138 KLPGYFDREVY 148
LP + Y
Sbjct: 139 SLPSNMLPQTY 149
>AT5G51800.1 | Symbols: | Protein kinase superfamily protein |
chr5:21048317-21051906 FORWARD LENGTH=972
Length = 972
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 82 VSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESSVKDET--ESFWLMRNDLRRERKL 139
V+ Y +HG+NR+ +W N+ G+++K+ EWE + +S++ + R++ +L
Sbjct: 193 VAEYLNRHGINRDSKIAGTKWDNMLGEFRKVYEWEKCGDQDKYGKSYFRLSPYERKQHRL 252
Query: 140 PGYFDREVY 148
P FD EVY
Sbjct: 253 PASFDEEVY 261
>AT3G10000.1 | Symbols: EDA31 | Homeodomain-like superfamily protein
| chr3:3076874-3078907 FORWARD LENGTH=481
Length = 481
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 11 ITTVDGEIDGAVNGSPPFAAASDERPTARLPRWTRQEILVLIQGKADAESRFKPGRAAGS 70
ITT+ + G V G F+ +D T R W RQE L+L++ ++ + +FK G
Sbjct: 65 ITTI--QSGGCVGG---FSGFTDGGGTGR---WPRQETLMLLEVRSRLDHKFKEANQKG- 115
Query: 71 AFGSSEPKWALVSS-YCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESSVKDETESFWLM 129
P W VS ++HG R +CR+++ NL YKK KE +S + + +++
Sbjct: 116 ------PLWDEVSRIMSEEHGYTRSGKKCREKFENLYKYYKKTKEGKSGRRQDGKNYRFF 169
Query: 130 R 130
R
Sbjct: 170 R 170
>AT1G33240.1 | Symbols: AT-GTL1, AT-GTL2, GTL1 | GT-2-like 1 |
chr1:12051859-12054320 REVERSE LENGTH=669
Length = 669
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 42 RWTRQEILVLIQGKADAESRFKPGRAAGSAFGSSEPKWALVSSYCKKHGVNREPVQCRKR 101
RW + EIL LI ++ E R++ G W +S+ K+ G NR +C+++
Sbjct: 435 RWPKAEILALINLRSGMEPRYQDNVPKGLL-------WEEISTSMKRMGYNRNAKRCKEK 487
Query: 102 WSNLAGDYKKIKE 114
W N+ YKK+KE
Sbjct: 488 WENINKYYKKVKE 500