Miyakogusa Predicted Gene

Lj1g3v3137850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3137850.1 Non Chatacterized Hit- tr|A9NXN9|A9NXN9_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,40.6,1e-18,coiled-coil,NULL; seg,NULL; MYB_LIKE,Myb-like domain;
Myb_DNA-bind_4,NULL,CUFF.30114.1
         (330 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33550.1 | Symbols:  | Homeodomain-like superfamily protein |...   284   7e-77
AT4G31270.1 | Symbols:  | sequence-specific DNA binding transcri...    73   3e-13
AT2G35640.1 | Symbols:  | Homeodomain-like superfamily protein |...    64   1e-10
AT1G31310.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...    57   1e-08
AT5G51800.1 | Symbols:  | Protein kinase superfamily protein | c...    51   1e-06
AT3G10000.1 | Symbols: EDA31 | Homeodomain-like superfamily prot...    51   1e-06
AT1G33240.1 | Symbols: AT-GTL1, AT-GTL2, GTL1 | GT-2-like 1 | ch...    49   6e-06

>AT2G33550.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr2:14210180-14211487 REVERSE LENGTH=314
          Length = 314

 Score =  284 bits (726), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 167/329 (50%), Positives = 208/329 (63%), Gaps = 43/329 (13%)

Query: 18  IDGAVNGSPPFAAASDER-PTARLPRWTRQEILVLIQGKADAESRFKPGRAAGSAFGSS- 75
           +DG  N S P     D+   TARLPRWTRQEILVLIQGK  AE+R + GRAAG A GS  
Sbjct: 13  VDGGENSSAPSNDGGDDGVKTARLPRWTRQEILVLIQGKRVAENRVRRGRAAGMALGSGQ 72

Query: 76  -EPKWALVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESSVKDETESFWLMRNDLR 134
            EPKWA VSSYCK+HGVNR PVQCRKRWSNLAGDYKKIKEWES +K+ETES+W+MRND+R
Sbjct: 73  MEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIKEETESYWVMRNDVR 132

Query: 135 RERKLPGYFDREVYXXXXXXXXXXXXXXXXXIEMAPEAVAREEEVHIYDSNRRVAGEDGL 194
           RE+KLPG+FD+EVY                   + P AV       +       A ++GL
Sbjct: 133 REKKLPGFFDKEVYDIVDGG-------------VIPPAVP------VLSLGLAPASDEGL 173

Query: 195 FSDCEKDEVLASVKSV-----VAPVPISEKQYLPLLRGCQVESNGQGTPNEKQP-ASNPE 248
            SD ++ E    + S      V  V   EKQ       C  +   QG   EKQP A+N E
Sbjct: 174 LSDLDRRESPEKLNSTPVAKSVTDVIDKEKQ-----EACVAD---QGRVKEKQPEAANVE 225

Query: 249 VGSTSQGERKRKRLA-------TDAAEEETLQTQLIDVLEKNGKMLRDQLEAQNMNFQLD 301
            GSTSQ ERKRKR +        +  E + +Q QLI++LE+NG++L  QLE QN+N +LD
Sbjct: 226 GGSTSQEERKRKRTSFGEKEEEEEEGETKKMQNQLIEILERNGQLLAAQLEVQNLNLKLD 285

Query: 302 RQHQKDTASSIIAVLDKLADALGRIADKL 330
           R+ +KD   S++AVL+KLADA+ +IADK+
Sbjct: 286 REQRKDHGDSLVAVLNKLADAVAKIADKM 314


>AT4G31270.1 | Symbols:  | sequence-specific DNA binding
           transcription factors | chr4:15183291-15184503 REVERSE
           LENGTH=294
          Length = 294

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 41  PRWTRQEILVLIQGKADAESRFKPGRAAGSAFGSSEPKWALVSSYCKKHGVNREPVQCRK 100
           P W  ++ LVL+   A  E       A  S   SS  KW +++  C    V+R   QCR+
Sbjct: 17  PEWAVKDCLVLVNEIAAVE-------ADCSNALSSFQKWTMITENCNALDVSRNLNQCRR 69

Query: 101 RWSNLAGDYKKIKEWESSVKDETESFWLMRNDLRRERKLPGYFDREVY 148
           +W +L  DY +IK+WES  +    S+W + +D R+   LPG  D E++
Sbjct: 70  KWDSLMSDYNQIKKWESQYRGTGRSYWSLSSDKRKLLNLPGDIDIELF 117


>AT2G35640.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr2:14982835-14984182 FORWARD LENGTH=340
          Length = 340

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 12/116 (10%)

Query: 43  WTRQEILVLIQGK-ADAESRFKPGRAAGSAFGSSEP---KWALVSSYCKKHGVNREPVQC 98
           WT  E LVLI+ K  D + R +  R+     G ++P   +W  +  YC + G  R   QC
Sbjct: 22  WTVSETLVLIEAKKMDDQRRVR--RSEKQPEGRNKPAELRWKWIEEYCWRRGCYRNQNQC 79

Query: 99  RKRWSNLAGDYKKIKEWESSVKDE------TESFWLMRNDLRRERKLPGYFDREVY 148
             +W NL  DYKKI+E+E S  +       + S+W M    R+E+ LP     ++Y
Sbjct: 80  NDKWDNLMRDYKKIREYERSRVESSFNTVTSSSYWKMDKTERKEKNLPSNMLPQIY 135


>AT1G31310.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr1:11198565-11200025 REVERSE LENGTH=383
          Length = 383

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 25/131 (19%)

Query: 43  WTRQEILVLIQGKADAESRFK------PGRAAGSAFGSSEP---KWALVSSYCKKHGVNR 93
           WT  E +VLI+ K   + R        P         S++P   +W  +  YC + G  R
Sbjct: 19  WTLNETMVLIEAKRMDDERRMRRSIGLPPPEQQQDIRSNKPAELRWKWIEDYCWRKGCMR 78

Query: 94  EPVQCRKRWSNLAGDYKKIKEWE----------------SSVKDETESFWLMRNDLRRER 137
              QC  +W NL  DYKK++E+E                S+   ET S+W M    R+ER
Sbjct: 79  SQNQCNDKWDNLMRDYKKVREYERRRVESSITAGESSSSSAPAGETASYWKMEKSERKER 138

Query: 138 KLPGYFDREVY 148
            LP     + Y
Sbjct: 139 SLPSNMLPQTY 149


>AT5G51800.1 | Symbols:  | Protein kinase superfamily protein |
           chr5:21048317-21051906 FORWARD LENGTH=972
          Length = 972

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 82  VSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESSVKDET--ESFWLMRNDLRRERKL 139
           V+ Y  +HG+NR+      +W N+ G+++K+ EWE     +   +S++ +    R++ +L
Sbjct: 193 VAEYLNRHGINRDSKIAGTKWDNMLGEFRKVYEWEKCGDQDKYGKSYFRLSPYERKQHRL 252

Query: 140 PGYFDREVY 148
           P  FD EVY
Sbjct: 253 PASFDEEVY 261


>AT3G10000.1 | Symbols: EDA31 | Homeodomain-like superfamily protein
           | chr3:3076874-3078907 FORWARD LENGTH=481
          Length = 481

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 16/121 (13%)

Query: 11  ITTVDGEIDGAVNGSPPFAAASDERPTARLPRWTRQEILVLIQGKADAESRFKPGRAAGS 70
           ITT+  +  G V G   F+  +D   T R   W RQE L+L++ ++  + +FK     G 
Sbjct: 65  ITTI--QSGGCVGG---FSGFTDGGGTGR---WPRQETLMLLEVRSRLDHKFKEANQKG- 115

Query: 71  AFGSSEPKWALVSS-YCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESSVKDETESFWLM 129
                 P W  VS    ++HG  R   +CR+++ NL   YKK KE +S  + + +++   
Sbjct: 116 ------PLWDEVSRIMSEEHGYTRSGKKCREKFENLYKYYKKTKEGKSGRRQDGKNYRFF 169

Query: 130 R 130
           R
Sbjct: 170 R 170


>AT1G33240.1 | Symbols: AT-GTL1, AT-GTL2, GTL1 | GT-2-like 1 |
           chr1:12051859-12054320 REVERSE LENGTH=669
          Length = 669

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 42  RWTRQEILVLIQGKADAESRFKPGRAAGSAFGSSEPKWALVSSYCKKHGVNREPVQCRKR 101
           RW + EIL LI  ++  E R++     G         W  +S+  K+ G NR   +C+++
Sbjct: 435 RWPKAEILALINLRSGMEPRYQDNVPKGLL-------WEEISTSMKRMGYNRNAKRCKEK 487

Query: 102 WSNLAGDYKKIKE 114
           W N+   YKK+KE
Sbjct: 488 WENINKYYKKVKE 500