Miyakogusa Predicted Gene
- Lj1g3v3116530.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3116530.1 Non Chatacterized Hit- tr|A2WVG1|A2WVG1_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,29.02,6e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; coiled-coil,NULL,CUFF.30110.1
(619 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67230.1 | Symbols: LINC1 | little nuclei1 | chr1:25151561-25... 377 e-104
AT1G13220.2 | Symbols: LINC2 | nuclear matrix constituent protei... 218 1e-56
AT1G68790.1 | Symbols: LINC3 | little nuclei3 | chr1:25834932-25... 195 8e-50
AT5G65770.3 | Symbols: LINC4 | little nuclei4 | chr5:26311587-26... 104 2e-22
AT5G65770.1 | Symbols: LINC4 | little nuclei4 | chr5:26311587-26... 104 2e-22
AT5G65780.2 | Symbols: ATBCAT-5 | branched-chain amino acid amin... 104 2e-22
AT5G65770.2 | Symbols: LINC4 | little nuclei4 | chr5:26311587-26... 103 3e-22
>AT1G67230.1 | Symbols: LINC1 | little nuclei1 |
chr1:25151561-25156032 REVERSE LENGTH=1132
Length = 1132
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 241/601 (40%), Positives = 358/601 (59%), Gaps = 32/601 (5%)
Query: 25 EREELLSLKAEVEKIKAXXXXXXXXXXXXXXXXKVTEEERSEYLRLQSQLKHEIDQYRLQ 84
++E +L+LKA VEK+ +VTEEERSEYLRLQ++LK +I++ R Q
Sbjct: 444 DKEIILNLKALVEKVSGENQAQLSEINKEKDELRVTEEERSEYLRLQTELKEQIEKCRSQ 503
Query: 85 KELLLKEADDLRQQKETFEREWDELDLKRADVEKELKNVIQQKEEIFKLQQFEEEKLKNE 144
+ELL KEA+DL+ Q+E+FE+EW+ELD ++A + ELKN+ QKE++ + EEE+LK E
Sbjct: 504 QELLQKEAEDLKAQRESFEKEWEELDERKAKIGNELKNITDQKEKLERHIHLEEERLKKE 563
Query: 145 KLATEDYVQRELETLKLAKESFAVEIELQKSSLAEKAQNEKNQMLLDFELRKNELEADMQ 204
K A + ++RELETL++AK SFA +E ++S L++KA++E++Q+L D E+RK +LE+DMQ
Sbjct: 564 KQAANENMERELETLEVAKASFAETMEYERSMLSKKAESERSQLLHDIEMRKRKLESDMQ 623
Query: 205 NQLEQKEKDLHERRNLFEEKRESELDNINFLRDVANREMEEMKLQRSKLEKEKQETDENK 264
LE+KE++L ++ LFEE+RE EL NIN+LRDVA REM +M+ +R ++EKEK E D +K
Sbjct: 624 TILEEKERELQAKKKLFEEEREKELSNINYLRDVARREMMDMQNERQRIEKEKLEVDSSK 683
Query: 265 KHLERQRTEMQEDIXXXXXXXXXXXXQREQFIIERSRFIEFVDKLRSCQNCGEMISEFVL 324
HLE Q+TE+++D+ QREQFI ERSRF+ ++ R+C CGE++SE VL
Sbjct: 684 NHLEEQQTEIRKDVDDLVALTKKLKEQREQFISERSRFLSSMESNRNCSRCGELLSELVL 743
Query: 325 SNLQSSADIENLEVPSLPKLAGDVIQGGSEVNLASSRQMTGV-PPATDPKSPVSGGTISW 383
+I+NLE+P++ KLA +++ N A ++M + P A PV+GG +SW
Sbjct: 744 ------PEIDNLEMPNMSKLA-NILD-----NEAPRQEMRDISPTAAGLGLPVTGGKVSW 791
Query: 384 LRKCTSKILKISPIRKIESEDVSGSRDEATLFSEKADIEDPAGGIPGNENEVELSFAIVN 443
RKCTSK+LK+SPI+ E D+ +E+A++ P+ + A
Sbjct: 792 FRKCTSKMLKLSPIKMTEPSVTWNLADQEPQSTEQANVGGPSTTVQ----------AATT 841
Query: 444 DYFDARMLQSGNDIAEVEANHDPSIDNQSNIDVSKAPEDVQPSDSK--VEKQKPXXXXXX 501
FD + +S EVE + S +QS+I+ SKA E S S V+ Q
Sbjct: 842 YSFDVQKAESETGTKEVEVTNVNSDGDQSDIN-SKAQEVAADSLSNLDVDGQSRMKGKGK 900
Query: 502 XXVKRTQTVKAVLEEAKAILGES-NAAEVVPGESNAEDSANVISESQKPSNTRRPANVRK 560
+RT++VK V+++AKA+ GES N E N +DS + S+ N RK
Sbjct: 901 ARTRRTRSVKDVVDDAKALYGESINLYEPNDSTENVDDSTKASTGETGRSDKAISKNGRK 960
Query: 561 RNRVQTSQVTASGHDGDASEGHSDSLVLGXXXXXXXXXXXPPVQ---ISRETRYNLRRPK 617
R RV + + + DG+ S+G SDS+ G Q + + RYNLRRP+
Sbjct: 961 RGRVGSLRTCTTEQDGNESDGKSDSVTGGAHQRKRRQKVASEQQGEVVGQ--RYNLRRPR 1018
Query: 618 R 618
R
Sbjct: 1019 R 1019
>AT1G13220.2 | Symbols: LINC2 | nuclear matrix constituent
protein-related | chr1:4515699-4520071 FORWARD
LENGTH=1128
Length = 1128
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 146/383 (38%), Positives = 231/383 (60%), Gaps = 15/383 (3%)
Query: 24 SEREELLSLKAEVEKIKAXXXXXXXXXXXXXXXXKVTEEERSEYLRLQSQLKHEIDQYRL 83
S++E L L+ E+EKI+A ++ +EER EYLRLQS+LK +I++ R+
Sbjct: 476 SDKESLEDLQQEIEKIRAEMTKKEEMIEEECKSLEIKKEEREEYLRLQSELKSQIEKSRV 535
Query: 84 QKELLLKEADDLRQQKETFEREWDELDLKRADVEKELKNVIQQKEEIFKLQQFEEEKLKN 143
+E L KE ++L+Q+KE FE+EW+ LD K+A KE + ++KE+ + Q E E+LK
Sbjct: 536 HEEFLSKEVENLKQEKERFEKEWEILDEKQAVYNKERIRISEEKEKFERFQLLEGERLKK 595
Query: 144 EKLATEDYVQRELETLKLAKESFAVEIELQKSSLAEKAQNEKNQMLLDFELRKNELEADM 203
E+ A + +EL+ ++L +ESF +E ++S+L EK + E+++++ D E+ + LE ++
Sbjct: 596 EESALRVQIMQELDDIRLQRESFEANMEHERSALQEKVKLEQSKVIDDLEMMRRNLEIEL 655
Query: 204 QNQLEQKEKDLHERRNLFEEKRESELDNINFLRDVANREMEEMKLQRSKLEKEKQETDEN 263
Q + EQ EKDL +R FE+KR +EL +IN + NREMEEM +RS L+KE +E ++
Sbjct: 656 QERKEQDEKDLLDRMAQFEDKRMAELSDINHQKQALNREMEEMMSKRSALQKESEEIAKH 715
Query: 264 KKHLERQRTEMQEDIXXXXXXXXXXXXQREQFIIERSRFIEFVDKLRSCQNCGEMISEFV 323
K L+ Q+ EM DI +RE F ERSRF+ FV KL+ C +CG+++++FV
Sbjct: 716 KDKLKEQQVEMHNDISELSTLSINLKKRREVFGRERSRFLAFVQKLKDCGSCGQLVNDFV 775
Query: 324 LSNLQSSADIENLEVPSLPKLAG-DVIQGGSEVNLASSRQMTGVPPATDPKSPVSGG--- 379
LS+LQ + N EV LP + + + G S N + S + + D + SGG
Sbjct: 776 LSDLQLPS---NDEVAILPPIGVLNDLPGSS--NASDS---CNIKKSLDGDASGSGGSRR 827
Query: 380 -TISWLRKCTSKILKISPIRKIE 401
++S L+KCTS I SP +++E
Sbjct: 828 PSMSILQKCTSIIF--SPSKRVE 848
>AT1G68790.1 | Symbols: LINC3 | little nuclei3 |
chr1:25834932-25839157 REVERSE LENGTH=1085
Length = 1085
Score = 195 bits (495), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 189/600 (31%), Positives = 284/600 (47%), Gaps = 114/600 (19%)
Query: 25 EREELLSLKAEVEKIKAXXXXXXXXXXXXXXXXKVTEEERSEYLRLQSQLKHEIDQYRLQ 84
++E L LK E+E+I ++T+EER E+LRLQS+LK +ID+ + +
Sbjct: 455 DKECLRKLKDEIEEIGTETTKQESRIREEHESLRITKEERVEFLRLQSELKQQIDKVKQE 514
Query: 85 KELLLKEADDLRQQKETFEREWDELDLKRADVEKELKNVIQQKEEIFKLQQFEEEKLKNE 144
+ELLLKE ++L+Q KE FE+EW+ LD KRA++ +E V ++ E++ LQ E+ +LK E
Sbjct: 515 EELLLKEREELKQDKERFEKEWEALDKKRANITREQNEVAEENEKLRNLQISEKHRLKRE 574
Query: 145 KLATEDYVQRELETLKLAKESFAVEIELQKSSLAEKAQNEKNQMLLDFELRKNELEADMQ 204
++ + D ++REL+ +K+ KESF ++E D E++K L+ + Q
Sbjct: 575 EMTSRDNLKRELDGVKMQKESFEADME-------------------DLEMQKRNLDMEFQ 615
Query: 205 NQLEQKEKDLHERRNLFEEKRESELDNINFLRDVANREMEEMKLQRSKLEKEKQETDENK 264
Q E E+D +ER +E++ + ELDNIN+ + +A REMEEM+ ++ LE+E+++ K
Sbjct: 616 RQEEAGERDFNERARTYEKRSQEELDNINYTKKLAQREMEEMQYEKLALEREREQISVRK 675
Query: 265 KHLERQRTEMQEDIXXXXXXXXXXXXQREQFIIERSRFIEFVDKLRSCQNCGEMISEFVL 324
K L+ Q EM +DI +R++FI ER RF+ F++KL+SC +CGE+ FVL
Sbjct: 676 KLLKEQEAEMHKDITELDVLRSSLKEKRKEFICERERFLVFLEKLKSCSSCGEITENFVL 735
Query: 325 SNLQSSADIENLEVPSLPKLAGDVIQGGSEVNLASSRQMTGVPPATDPKSPVSGGTISWL 384
S+L+ D+E+ GD G L + + P A + K S L
Sbjct: 736 SDLR-LPDVED----------GDKRFGKQ--KLKAEEALNISPSAENSKR------TSLL 776
Query: 385 RKCTSKILKISPIRKIESEDVSGSRDEATLFSEKADIEDPAGGIPGNENEVELSFAIVND 444
K SK+L ISPI G D+ T ++ P P +D
Sbjct: 777 GKIASKLLSISPI---------GKTDKVTDLG--ITVKLPESSQP-------------DD 812
Query: 445 YFDARMLQSGNDIAEVEANHDPSIDNQSNID--VSKAPEDVQPSDSKVEK----QKPXXX 498
D SG D H+PS QS D + + PE S+ K +K +
Sbjct: 813 SLDR---VSGED-------HEPSATEQSFTDSRIQEGPEGSLQSEMKSDKPRRGRGRGRG 862
Query: 499 XXXXXVKRTQTVKAVLEEAKAILGESNAAEVVPGESNAEDSANVISESQKPSNTRRPANV 558
R+Q KAV S KPS+ P
Sbjct: 863 RGKSVRGRSQATKAV------------------------------SRDSKPSDGETP--- 889
Query: 559 RKRNRVQTSQVTASGH-DGDASEGHSDSLVLGXXXXXXXXXXXPPVQISRETRYNLRRPK 617
RKR R QTS++T S GD+ EG DS+ G P Q +TRY LRR +
Sbjct: 890 RKRQREQTSRITESEQAAGDSDEG-VDSITTG-GRRKKRQIAVPVSQTPGQTRYQLRRHR 947
>AT5G65770.3 | Symbols: LINC4 | little nuclei4 |
chr5:26311587-26315610 FORWARD LENGTH=1010
Length = 1010
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 176/349 (50%), Gaps = 24/349 (6%)
Query: 63 ERSEYLRLQSQLKHEIDQYRLQKELLLKEADDLRQQKETFEREWDELDLKRADVEKELKN 122
E SE L+ +LK E+D R QK +L EAD L+ +K FE EW+ +D+KR ++ KE +
Sbjct: 492 ETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEY 551
Query: 123 VIQQKEEIFKLQQFEEEKLKNEKLATEDYVQRELETLKLAKESFAVEIELQKSSLAEKAQ 182
+ +Q+E + E + +K E+ A + + ++E+L +E F ++ + S K Q
Sbjct: 552 ITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQ 611
Query: 183 NEKNQMLLDFELRKNELEADMQNQLEQKEKDLHERRNLFEEKRESELDNINFLRDVANRE 242
E+ LL E++K ELE ++N+ E+ E +R FE++++ E + I L+++A +E
Sbjct: 612 RERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKE 671
Query: 243 MEEMKLQRSKLEKEKQETDENKKHLERQRTEMQEDIXXXXXXXXXXXXQREQFIIERSRF 302
+E ++++ +L+ E+ E +++ ER+ E+++ + QR ER
Sbjct: 672 LEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEI 731
Query: 303 IEFVDKLRSCQNCGEMISEFVLSNLQSSADIENLE--VPSLPKLAGDVIQGGSEVNLASS 360
+++L+ +N + + ++ +Q S NLE + L V+ E++L +
Sbjct: 732 RHEIEELKKLENLKVALDDMSMAKMQLS----NLERSWEKVSALKQKVVSRDDELDLQN- 786
Query: 361 RQMTGVPPATDPK-------------SPVSGGTISWLRKCTSKILKISP 396
GV ++ + +P S SW+++CT+ I K SP
Sbjct: 787 ----GVSTVSNSEDGYNSSMERQNGLTPSSATPFSWIKRCTNLIFKTSP 831
>AT5G65770.1 | Symbols: LINC4 | little nuclei4 |
chr5:26311587-26315610 FORWARD LENGTH=1010
Length = 1010
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 176/349 (50%), Gaps = 24/349 (6%)
Query: 63 ERSEYLRLQSQLKHEIDQYRLQKELLLKEADDLRQQKETFEREWDELDLKRADVEKELKN 122
E SE L+ +LK E+D R QK +L EAD L+ +K FE EW+ +D+KR ++ KE +
Sbjct: 492 ETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEY 551
Query: 123 VIQQKEEIFKLQQFEEEKLKNEKLATEDYVQRELETLKLAKESFAVEIELQKSSLAEKAQ 182
+ +Q+E + E + +K E+ A + + ++E+L +E F ++ + S K Q
Sbjct: 552 ITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQ 611
Query: 183 NEKNQMLLDFELRKNELEADMQNQLEQKEKDLHERRNLFEEKRESELDNINFLRDVANRE 242
E+ LL E++K ELE ++N+ E+ E +R FE++++ E + I L+++A +E
Sbjct: 612 RERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKE 671
Query: 243 MEEMKLQRSKLEKEKQETDENKKHLERQRTEMQEDIXXXXXXXXXXXXQREQFIIERSRF 302
+E ++++ +L+ E+ E +++ ER+ E+++ + QR ER
Sbjct: 672 LEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEI 731
Query: 303 IEFVDKLRSCQNCGEMISEFVLSNLQSSADIENLE--VPSLPKLAGDVIQGGSEVNLASS 360
+++L+ +N + + ++ +Q S NLE + L V+ E++L +
Sbjct: 732 RHEIEELKKLENLKVALDDMSMAKMQLS----NLERSWEKVSALKQKVVSRDDELDLQN- 786
Query: 361 RQMTGVPPATDPK-------------SPVSGGTISWLRKCTSKILKISP 396
GV ++ + +P S SW+++CT+ I K SP
Sbjct: 787 ----GVSTVSNSEDGYNSSMERQNGLTPSSATPFSWIKRCTNLIFKTSP 831
>AT5G65780.2 | Symbols: ATBCAT-5 | branched-chain amino acid
aminotransferase 5 / branched-chain amino acid
transaminase 5 (BCAT5) | chr5:26311587-26315610 FORWARD
LENGTH=1018
Length = 1018
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 176/349 (50%), Gaps = 24/349 (6%)
Query: 63 ERSEYLRLQSQLKHEIDQYRLQKELLLKEADDLRQQKETFEREWDELDLKRADVEKELKN 122
E SE L+ +LK E+D R QK +L EAD L+ +K FE EW+ +D+KR ++ KE +
Sbjct: 500 ETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEY 559
Query: 123 VIQQKEEIFKLQQFEEEKLKNEKLATEDYVQRELETLKLAKESFAVEIELQKSSLAEKAQ 182
+ +Q+E + E + +K E+ A + + ++E+L +E F ++ + S K Q
Sbjct: 560 ITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQ 619
Query: 183 NEKNQMLLDFELRKNELEADMQNQLEQKEKDLHERRNLFEEKRESELDNINFLRDVANRE 242
E+ LL E++K ELE ++N+ E+ E +R FE++++ E + I L+++A +E
Sbjct: 620 RERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKE 679
Query: 243 MEEMKLQRSKLEKEKQETDENKKHLERQRTEMQEDIXXXXXXXXXXXXQREQFIIERSRF 302
+E ++++ +L+ E+ E +++ ER+ E+++ + QR ER
Sbjct: 680 LEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEI 739
Query: 303 IEFVDKLRSCQNCGEMISEFVLSNLQSSADIENLE--VPSLPKLAGDVIQGGSEVNLASS 360
+++L+ +N + + ++ +Q S NLE + L V+ E++L +
Sbjct: 740 RHEIEELKKLENLKVALDDMSMAKMQLS----NLERSWEKVSALKQKVVSRDDELDLQN- 794
Query: 361 RQMTGVPPATDPK-------------SPVSGGTISWLRKCTSKILKISP 396
GV ++ + +P S SW+++CT+ I K SP
Sbjct: 795 ----GVSTVSNSEDGYNSSMERQNGLTPSSATPFSWIKRCTNLIFKTSP 839
>AT5G65770.2 | Symbols: LINC4 | little nuclei4 |
chr5:26311587-26315544 FORWARD LENGTH=1042
Length = 1042
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 176/349 (50%), Gaps = 24/349 (6%)
Query: 63 ERSEYLRLQSQLKHEIDQYRLQKELLLKEADDLRQQKETFEREWDELDLKRADVEKELKN 122
E SE L+ +LK E+D R QK +L EAD L+ +K FE EW+ +D+KR ++ KE +
Sbjct: 519 ETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEY 578
Query: 123 VIQQKEEIFKLQQFEEEKLKNEKLATEDYVQRELETLKLAKESFAVEIELQKSSLAEKAQ 182
+ +Q+E + E + +K E+ A + + ++E+L +E F ++ + S K Q
Sbjct: 579 ITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQ 638
Query: 183 NEKNQMLLDFELRKNELEADMQNQLEQKEKDLHERRNLFEEKRESELDNINFLRDVANRE 242
E+ LL E++K ELE ++N+ E+ E +R FE++++ E + I L+++A +E
Sbjct: 639 RERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKE 698
Query: 243 MEEMKLQRSKLEKEKQETDENKKHLERQRTEMQEDIXXXXXXXXXXXXQREQFIIERSRF 302
+E ++++ +L+ E+ E +++ ER+ E+++ + QR ER
Sbjct: 699 LEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEI 758
Query: 303 IEFVDKLRSCQNCGEMISEFVLSNLQSSADIENLE--VPSLPKLAGDVIQGGSEVNLASS 360
+++L+ +N + + ++ +Q S NLE + L V+ E++L +
Sbjct: 759 RHEIEELKKLENLKVALDDMSMAKMQLS----NLERSWEKVSALKQKVVSRDDELDLQN- 813
Query: 361 RQMTGVPPATDPK-------------SPVSGGTISWLRKCTSKILKISP 396
GV ++ + +P S SW+++CT+ I K SP
Sbjct: 814 ----GVSTVSNSEDGYNSSMERQNGLTPSSATPFSWIKRCTNLIFKTSP 858