Miyakogusa Predicted Gene

Lj1g3v3105090.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3105090.1 tr|A9SNZ9|A9SNZ9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_230348,31.42,2e-17,seg,NULL; BETA-MANNOSIDASE,NULL;
BETA-GALACTOSIDASE,NULL,gene.g34145.t1.1
         (397 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09010.1 | Symbols:  | glycoside hydrolase family 2 protein |...   252   4e-67

>AT1G09010.1 | Symbols:  | glycoside hydrolase family 2 protein |
           chr1:2895259-2899287 REVERSE LENGTH=944
          Length = 944

 Score =  252 bits (643), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 140/285 (49%), Positives = 180/285 (63%), Gaps = 31/285 (10%)

Query: 107 YSNPDNSDKVHDQIQLYGDAKDLDDFCLKVVNTTSEPLSDLAIEVSVWDLEGTRPYYKVR 166
           Y     ++ VH Q+       +L  + ++VVNTTS+ LSD+AIE SVWDL+G  PYYKV 
Sbjct: 679 YGCRSAAEPVHVQL-------NLASYFVEVVNTTSKELSDVAIEASVWDLDGNCPYYKVF 731

Query: 167 ENLFLLPKKVAPVGQMNYPKSKNPKPVYFLLLKLYDMSDHRIISRNFYWLHLSGGDYKLL 226
           + +   PKKV  + +  YPK+ NPK VYFLLLKLY +SD  +ISRNFYWLHL G +Y LL
Sbjct: 732 KIVSAPPKKVVKISEFKYPKAANPKHVYFLLLKLYTVSDKAVISRNFYWLHLPGKNYTLL 791

Query: 227 EPYRTKKIPLKITTKVLLEESTYNIQVHVTNTSKRPDSESSTFEHSSRAMLDSMETVHAG 286
           EPYR K+IPLKIT   ++  S Y ++V+V NTS+   +++   E   R            
Sbjct: 792 EPYRKKQIPLKITCNAVMVGSRYELEVNVHNTSRANLAKNVVQEDEKR------------ 839

Query: 287 AAKEHDSGWFKRIIHRCF--AGKSDGLKVCEIDGHDVGVAFFLHFSVHTSKKDYKEGEDT 344
                D G  +++  RC   A  + GLKV E+ G D GVAFFL FSVH ++    E +DT
Sbjct: 840 -----DLGLLQKLFSRCVVSADSNRGLKVVEMKGSDSGVAFFLRFSVHNAE---TEKQDT 891

Query: 345 RILPVHYSDNYFSLVPGETMPVNISFDVPQGV--TPRVVLHGWNY 387
           RILPVHYSDNYFSLVPGE+M   ISF  P G+  +PRV+L GWNY
Sbjct: 892 RILPVHYSDNYFSLVPGESMSFKISFAAPTGMKKSPRVMLQGWNY 936



 Score =  204 bits (519), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 95/133 (71%), Positives = 107/133 (80%), Gaps = 3/133 (2%)

Query: 4   DPSQYLDGTRIYVQGSMWDGFADGMGNFTDGPYQIQYPEXXXXXXXXXXGFNPEVGSVGM 63
           DPS YLDGTR+Y+QGSMWDGFADG GNFTDGPY+IQYPE          GFNPEVGSVGM
Sbjct: 496 DPSVYLDGTRVYIQGSMWDGFADGKGNFTDGPYEIQYPEDFFKDTYYKYGFNPEVGSVGM 555

Query: 64  PVASTIRATMPSEGWKIPVFKKLSNGYVKEVPNPIWEYHKYIPYSNPDNSDKVHDQIQLY 123
           PVA TIRATMP EGW IP+FKK  +G++KEVPN +W+YHKYIPYSNP    KVHDQI +Y
Sbjct: 556 PVAETIRATMPPEGWTIPLFKKGLDGFIKEVPNRMWDYHKYIPYSNP---GKVHDQILMY 612

Query: 124 GDAKDLDDFCLKV 136
           G  ++LDDFCLK 
Sbjct: 613 GTPENLDDFCLKA 625