Miyakogusa Predicted Gene

Lj1g3v3090460.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3090460.1 Non Chatacterized Hit- tr|B8B1N8|B8B1N8_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,45.45,0.0000000000002,seg,NULL,CUFF.30023.1
         (506 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30240.2 | Symbols:  | unknown protein; Has 169 Blast hits to...   280   1e-75
AT1G30240.1 | Symbols:  | FUNCTIONS IN: binding; INVOLVED IN: bi...   272   4e-73

>AT1G30240.2 | Symbols:  | unknown protein; Has 169 Blast hits to
           168 proteins in 75 species: Archae - 0; Bacteria - 0;
           Metazoa - 49; Fungi - 68; Plants - 46; Viruses - 0;
           Other Eukaryotes - 6 (source: NCBI BLink). |
           chr1:10641241-10645838 REVERSE LENGTH=827
          Length = 827

 Score =  280 bits (717), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 163/381 (42%), Positives = 224/381 (58%), Gaps = 10/381 (2%)

Query: 1   MSSVSTLMFSCCTMLTSSYPVQVNVPVPSILALVERILMVNGSLPQMSFPFMTSTQQENI 60
           +S VS LMF   TMLT+SY  ++N+PV S+L+LVER+L+VNGSLP+   PFMT  QQE +
Sbjct: 313 VSRVSALMFCTSTMLTTSYKSKINIPVGSLLSLVERVLLVNGSLPRAMSPFMTGIQQELV 372

Query: 61  CSELPVLHLSSMELLMAALKGSGSQLLPHAASIARIITQYFKTCALPELRIKVYSVTKTL 120
           C+ELP LH S++ELL A LK   SQLLP+AAS+ R+++ YF+ C+LPELRIK+YS+T TL
Sbjct: 373 CAELPALHSSALELLCATLKSIRSQLLPYAASVVRLVSSYFRKCSLPELRIKLYSITTTL 432

Query: 121 LISMGVGIAMYLEQEVVNNAIADLSTIENKNGVTLNCSNSGVSIGVPPPTNHRKRKHISK 180
           L SMG+G+AM L QEVV NA  DL     +     +  N  ++ G       +KRKH   
Sbjct: 433 LKSMGIGMAMQLAQEVVINASVDLDQTSLEAFDVASSKNPSLTNGALLQACSKKRKH--- 489

Query: 181 AGSLQEHVESAGLGVKDPKNRPLTPISLRIAALEAIGALLSVAGALRSEWWRSNVDRLLM 240
           +G      E++   ++ P N   +PISL+IA+LEA+  LL++ GAL S+ WR +VD LL+
Sbjct: 490 SGV---EAENSVFELRIPHNHLRSPISLKIASLEALETLLTIGGALGSDSWRESVDNLLL 546

Query: 241 VIAIDSFKEGPSSEEISVLQQKDPXXXXXXXXXXXXXXXXXXXXXXXRVRPPYISQGLPL 300
             A ++ +   ++ E                                RVRP ++++GL L
Sbjct: 547 TTATNACEGRWANAETYHCLPNKSTTDLVEFQLAALRAFSASLVSPSRVRPAFLAEGLEL 606

Query: 301 FRRGKQQTGTKLAEFCAHALLTLEVLIHPRALPLLNYDCAINNEAQRNIQDEYGSWNSSS 360
           FR GK Q G K+A FCAHAL++LEV+IHPRALPL       N   + N    +GS   ++
Sbjct: 607 FRTGKLQAGMKVAGFCAHALMSLEVVIHPRALPLDGLPTLSNRFPESN---SFGSEKHNT 663

Query: 361 TAFGLPQTALPDYYDDLYARW 381
                      D  DDL  RW
Sbjct: 664 PNLNKLNVIAHD-GDDLGNRW 683


>AT1G30240.1 | Symbols:  | FUNCTIONS IN: binding; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 21 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Armadillo-type fold
           (InterPro:IPR016024); Has 165 Blast hits to 164 proteins
           in 73 species: Archae - 0; Bacteria - 0; Metazoa - 47;
           Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes -
           4 (source: NCBI BLink). | chr1:10641241-10645838 REVERSE
           LENGTH=825
          Length = 825

 Score =  272 bits (695), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 162/381 (42%), Positives = 222/381 (58%), Gaps = 12/381 (3%)

Query: 1   MSSVSTLMFSCCTMLTSSYPVQVNVPVPSILALVERILMVNGSLPQMSFPFMTSTQQENI 60
           +S VS LMF   TMLT+SY  ++N+PV S+L+LVER+L+VNGSLP+   PFMT  QQE +
Sbjct: 313 VSRVSALMFCTSTMLTTSYKSKINIPVGSLLSLVERVLLVNGSLPRAMSPFMTGIQQELV 372

Query: 61  CSELPVLHLSSMELLMAALKGSGSQLLPHAASIARIITQYFKTCALPELRIKVYSVTKTL 120
           C+ELP LH S++ELL A LK   SQLLP+AAS+ R+++ YF+ C+LPELRIK+YS+T TL
Sbjct: 373 CAELPALHSSALELLCATLKSIRSQLLPYAASVVRLVSSYFRKCSLPELRIKLYSITTTL 432

Query: 121 LISMGVGIAMYLEQEVVNNAIADLSTIENKNGVTLNCSNSGVSIGVPPPTNHRKRKHISK 180
           L SM  G+AM L QEVV NA  DL     +     +  N  ++ G       +KRKH   
Sbjct: 433 LKSM--GMAMQLAQEVVINASVDLDQTSLEAFDVASSKNPSLTNGALLQACSKKRKH--- 487

Query: 181 AGSLQEHVESAGLGVKDPKNRPLTPISLRIAALEAIGALLSVAGALRSEWWRSNVDRLLM 240
           +G      E++   ++ P N   +PISL+IA+LEA+  LL++ GAL S+ WR +VD LL+
Sbjct: 488 SGV---EAENSVFELRIPHNHLRSPISLKIASLEALETLLTIGGALGSDSWRESVDNLLL 544

Query: 241 VIAIDSFKEGPSSEEISVLQQKDPXXXXXXXXXXXXXXXXXXXXXXXRVRPPYISQGLPL 300
             A ++ +   ++ E                                RVRP ++++GL L
Sbjct: 545 TTATNACEGRWANAETYHCLPNKSTTDLVEFQLAALRAFSASLVSPSRVRPAFLAEGLEL 604

Query: 301 FRRGKQQTGTKLAEFCAHALLTLEVLIHPRALPLLNYDCAINNEAQRNIQDEYGSWNSSS 360
           FR GK Q G K+A FCAHAL++LEV+IHPRALPL       N   + N    +GS   ++
Sbjct: 605 FRTGKLQAGMKVAGFCAHALMSLEVVIHPRALPLDGLPTLSNRFPESN---SFGSEKHNT 661

Query: 361 TAFGLPQTALPDYYDDLYARW 381
                      D  DDL  RW
Sbjct: 662 PNLNKLNVIAHD-GDDLGNRW 681