Miyakogusa Predicted Gene
- Lj1g3v3076160.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3076160.1 Non Chatacterized Hit- tr|I1N223|I1N223_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,29.39,1e-18,FBA_1,F-box associated domain, type 1; F_box_assoc_1:
F-box protein interaction domain,F-box associa,gene.g34096.t1.1
(332 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23880.1 | Symbols: | F-box and associated interaction domai... 96 2e-20
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 91 1e-18
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ... 75 6e-14
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ... 75 6e-14
AT4G22390.1 | Symbols: | F-box associated ubiquitination effect... 67 2e-11
AT1G33530.1 | Symbols: | F-box family protein | chr1:12159884-1... 62 7e-10
AT4G17780.1 | Symbols: | F-box and associated interaction domai... 58 8e-09
AT5G10340.1 | Symbols: | F-box family protein | chr5:3253122-32... 56 3e-08
AT3G62380.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box asso... 56 4e-08
AT1G32600.1 | Symbols: | F-box associated ubiquitination effect... 55 6e-08
AT1G71320.1 | Symbols: | F-box family protein | chr1:26882485-2... 54 1e-07
AT3G16210.1 | Symbols: | F-box family protein | chr3:5494533-54... 52 4e-07
AT3G21410.1 | Symbols: | F-box and associated interaction domai... 52 5e-07
AT1G09650.1 | Symbols: | F-box and associated interaction domai... 52 7e-07
AT1G52490.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box doma... 50 2e-06
AT2G43445.1 | Symbols: | F-box and associated interaction domai... 50 2e-06
AT2G43260.1 | Symbols: | F-box and associated interaction domai... 50 3e-06
AT2G34280.1 | Symbols: | F-box and associated interaction domai... 48 9e-06
>AT3G23880.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:8622061-8623155
REVERSE LENGTH=364
Length = 364
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 151/340 (44%), Gaps = 54/340 (15%)
Query: 3 VCKTWNSLIYDNLSYLRRRA--NPRVLSVSNVAPFNV--------SSLPVKSLLKTPH-- 50
VC +W SLI + L L+ + S +P+ V S + SL
Sbjct: 37 VCSSWRSLISETLFALKHALILETSKATTSTKSPYGVITTSRYHLKSCCIHSLYNASTVY 96
Query: 51 -SEDESHLICTLENRYDVIGSCNGLICLLGTHLYRIGIKWVLFL-NPT----TRSMSHKT 104
SE + L+ + Y V+G+C+GL+C + + L+L NPT R S
Sbjct: 97 VSEHDGELLG--RDYYQVVGTCHGLVC------FHVDYDKSLYLWNPTIKLQQRLSSSDL 148
Query: 105 PEVEIDCVGHYGFGYDHVTDTYKVVLLPQ-----KLKIKVFSMGETNWKVTRFSVPYTII 159
+ +CV YGFGYD D YKVV L Q K++ K++S + W+ + S P ++
Sbjct: 149 ETSDDECVVTYGFGYDESEDDYKVVALLQQRHQVKIETKIYSTRQKLWR-SNTSFPSGVV 207
Query: 160 ---NGRVGVHINGTLNWLVSRNNQKFAIMIFSFDLNKEEHVTFSLPDI-DRHAVTRLLGV 215
R G++INGTLN + + + I S+D++++E P R T LG
Sbjct: 208 VADKSRSGIYINGTLN--WAATSSSSSWTIISYDMSRDEFKELPGPVCCGRGCFTMTLGD 265
Query: 216 LDGFLCVSYVSCSSGYNLSIWKMKEFGIDDSWTQLLNIRYEDLQSHPGMTNYQCVMMYYQ 275
L G C+S V G N +W MKEFG SW++LL+I PG+T++ +
Sbjct: 266 LRG--CLSMVCYCKGANADVWVMKEFGEVYSWSKLLSI--------PGLTDFVRPLWISD 315
Query: 276 GL------RSDFPLCLFDNGDFVMLKERLLCNHRDNRVEL 309
GL RS L NG F + RD +V L
Sbjct: 316 GLVVLLEFRSGLALYNCSNGRFHYPVSNSISGCRDAKVYL 355
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD LENGTH=427
Length = 427
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 134/292 (45%), Gaps = 57/292 (19%)
Query: 63 NRYDVIGSCNGLICLLGTHLYRIGIKWVLFLNPTT-------RSMSHKTPEVEIDCVGHY 115
N +++GS NGL+C+ G V NPTT + K+ E E D Y
Sbjct: 161 NWVEIVGSSNGLVCI------SPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTY 214
Query: 116 GFGYDHVTDTYKVVLL----PQKLKIKVFSMGETNW-KVTRFSVPYTIINGRVGVHINGT 170
GFG+D +TD YK+V L L V+S+ +W ++ + + + GVH NG
Sbjct: 215 GFGFDGLTDDYKLVKLVATSEDILDASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGA 274
Query: 171 LNWLV--SRNNQKFAIMIFSFDLNKEEHVTFSLPDIDRHAVTR----LLGVLDGFLCVSY 224
++W+ SR+NQ+ ++ +FD+ EE +PD R ++G L+G LCV
Sbjct: 275 IHWVFTESRHNQR---VVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCV-V 330
Query: 225 VSCSSGYNLSIWKMKEFGIDDSWTQL-LNIRYEDLQSHPGMTNYQCVMMYYQGLRSDFPL 283
SC ++ IW M E+G SW+++ +N+ Y RS PL
Sbjct: 331 NSCYDVHD-DIWVMSEYGEAKSWSRIRINLLY----------------------RSMKPL 367
Query: 284 CLFDNGDFVMLK---ERLLCNHRDNRVELLQI--PKNINGFNAVSYFESFIS 330
C N + V+L+ + +L N N L I K +GF A +Y ES IS
Sbjct: 368 CSTKNDEEVLLELDGDLVLYNFETNASSNLGICGVKLSDGFEANTYVESLIS 419
>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 101/225 (44%), Gaps = 46/225 (20%)
Query: 66 DVIGSCNGLICLLGTHLYRIGIKWVLFLNPTTRSMSHKTPEVEIDCVG--------HYGF 117
+V GS NGLI L + + NP+TR + H+ P ID YG
Sbjct: 90 EVFGSSNGLIGLSNSPTD------LAVFNPSTRQI-HRLPPSSIDLPDGSSTRGYVFYGL 142
Query: 118 GYDHVTDTYKVVLLPQ-------------KLKIKVFSMGETNWKVTR---------FSVP 155
GYD V+D YKVV + Q ++KVFS+ + +WK F
Sbjct: 143 GYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFY 202
Query: 156 YTIINGR-VGVHINGTLNWLVSRNNQKFAI-MIFSFDLNKEEHVTFSLPDIDRHA---VT 210
Y ++ R GV +L+W++ R A +I FDL EE P+ + +
Sbjct: 203 YHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQ 262
Query: 211 RLLGVLDGFLCVSYVSCSSGYN-LSIWKMKEFGIDDSWTQLLNIR 254
+GVLDG LC+ C+ + + +W MKE+ + DSWT++ ++
Sbjct: 263 MDIGVLDGCLCLM---CNYDQSYVDVWMMKEYNVRDSWTKVFTVQ 304
>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 101/225 (44%), Gaps = 46/225 (20%)
Query: 66 DVIGSCNGLICLLGTHLYRIGIKWVLFLNPTTRSMSHKTPEVEIDCVG--------HYGF 117
+V GS NGLI L + + NP+TR + H+ P ID YG
Sbjct: 90 EVFGSSNGLIGLSNSPTD------LAVFNPSTRQI-HRLPPSSIDLPDGSSTRGYVFYGL 142
Query: 118 GYDHVTDTYKVVLLPQ-------------KLKIKVFSMGETNWKVTR---------FSVP 155
GYD V+D YKVV + Q ++KVFS+ + +WK F
Sbjct: 143 GYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFY 202
Query: 156 YTIINGR-VGVHINGTLNWLVSRNNQKFAI-MIFSFDLNKEEHVTFSLPDIDRHA---VT 210
Y ++ R GV +L+W++ R A +I FDL EE P+ + +
Sbjct: 203 YHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQ 262
Query: 211 RLLGVLDGFLCVSYVSCSSGYN-LSIWKMKEFGIDDSWTQLLNIR 254
+GVLDG LC+ C+ + + +W MKE+ + DSWT++ ++
Sbjct: 263 MDIGVLDGCLCLM---CNYDQSYVDVWMMKEYNVRDSWTKVFTVQ 304
>AT4G22390.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:11813757-11815074 REVERSE
LENGTH=402
Length = 402
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 118/282 (41%), Gaps = 69/282 (24%)
Query: 16 SYLRRR-----------ANPRVL-SVSNVAPFNVSSLPVKSLLKTPHSEDESHLICTLEN 63
S+LRRR PR+L +V +P NVS +P H
Sbjct: 43 SHLRRRLETGEHLMILLRGPRLLRTVELDSPENVSDIP--------HPLQAGGFT----- 89
Query: 64 RYDVIGSCNGLICLLGTHLYRIGIKWVLFLNPTTRSMSHKTPEVEIDCVGH--------Y 115
+V GS NG+I L + + + NP+TR + H+ P ID Y
Sbjct: 90 --EVFGSFNGVIGLCNSPVD------LAIFNPSTRKI-HRLPIEPIDFPERDITREYVFY 140
Query: 116 GFGYDHVTDTYKVVLL------------PQKLKIKVFSMGETNWK---------VTRFSV 154
G GYD V D +KVV + P +++KVFS+ + +WK + S
Sbjct: 141 GLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSLKKNSWKRVCLMFEFQILWISY 200
Query: 155 PYTIINGR-VGVHINGTLNWLVSRNNQKFAI-MIFSFDLNKEEHVTFSLPDIDRHAVTRL 212
Y ++ R GV +N L+W++ R A I +DL ++ S P
Sbjct: 201 YYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIEDNMD 260
Query: 213 LGVLDGFLCVSYVSCSSGYN-LSIWKMKEFGIDDSWTQLLNI 253
+GVLDG +C + C Y+ + +W +KE+ SWT+L +
Sbjct: 261 IGVLDGCVC---LMCYDEYSHVDVWVLKEYEDYKSWTKLYRV 299
>AT1G33530.1 | Symbols: | F-box family protein |
chr1:12159884-12161314 FORWARD LENGTH=441
Length = 441
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 67 VIGSCNGLICLLGTHLYRIGIKWVLFLNPTTRSMSHKTPEVEIDCVGHYGFGYDHVTDTY 126
V GSCNGL+C+ Y + ++ LNP T TP GFG D VT TY
Sbjct: 186 VPGSCNGLVCV-----YELDSVYIYLLNPMTGVTRTLTPPRGTKL--SVGFGIDVVTGTY 238
Query: 127 KVVLLP--QKLKIKVFSMGETNWKV---TRFSVPYTIING--RVGVHINGTLNWLVSRNN 179
KV++L ++ VF + W+ T +P + I R V +NG+L WL++ +
Sbjct: 239 KVMVLYGFDRVGTVVFDLDTNKWRQRYKTAGPMPLSCIPTPERNPVFVNGSLFWLLASDF 298
Query: 180 QKFAIMIFSFDLNKEEHVTFSLP----DIDRHAVTRLLGVLDGFLCVSYVSCSSGYNLSI 235
+ +M DL+ E+ T S P D+D + + L+ LCVS V G + +
Sbjct: 299 SEILVM----DLHTEKFRTLSQPNDMDDVDVSSGYIYMWSLEDRLCVSNV--RQGLHSYV 352
Query: 236 WKMKEFGIDDSWTQ 249
W + + + + W +
Sbjct: 353 WVLVQDELSEKWER 366
>AT4G17780.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr4:9880259-9881455
REVERSE LENGTH=398
Length = 398
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 32/208 (15%)
Query: 70 SCNGLICLLGTHLYRIGIKWVLFLNPTTRSMSHKTPEV-EIDCVG------HY--GFGYD 120
+C+GL+C+L +W+ LNP TR + I VG H+ GFG D
Sbjct: 102 TCDGLVCILEP-------RWIDVLNPWTRQLRRYGFGFGTIFGVGSAFSPRHWAMGFGKD 154
Query: 121 HVTDTYKVVLL-----------PQKLKIKVFSMGETNWKVTRFSVPYTIINGRVGVHING 169
VT +YKVV + +++ V + W++ PY + R NG
Sbjct: 155 KVTGSYKVVKMCLISFSEICARDPEVEYSVLDVETGEWRMLS-PPPYKVFEVRKSECANG 213
Query: 170 TLNWLVSRNNQKFAIMIFSFDLNKEEHVTFSLPDIDRHAVTRLLGVLDGFLCVSYVSCSS 229
++ WL + + I+ + DL+KEE S+PD+ T + L+ L ++ +
Sbjct: 214 SIYWLHKPTERAWTIL--ALDLHKEELHNISVPDMSVTQETFQIVNLEDRLAIANTYTKT 271
Query: 230 GYNLSIWKMKEFGIDDSWTQLLNIRYED 257
+ L IW M ++WT+ +I E+
Sbjct: 272 EWKLEIWSMDTEV--ETWTKTYSIDLEN 297
>AT5G10340.1 | Symbols: | F-box family protein |
chr5:3253122-3255045 FORWARD LENGTH=445
Length = 445
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 42/200 (21%)
Query: 20 RRANPRVLSVSNVAPFNVSSLPVKSLLKTPHSEDESHLICTLENRYDVIGSCNGLICLLG 79
R+ +P + S + F V S + TP ED+ + +C SC+GLICL
Sbjct: 135 RQQDPSISSFEALRTFLVESSAASVQIPTPW-EDKLYFVCN--------TSCDGLICLFS 185
Query: 80 THLYRIGIKWVLFLNPTTRSMSHKT-PEVEIDCVGH---------------YGFGYDHVT 123
Y + + +NPTTR H+T P+ V GFG D ++
Sbjct: 186 --FYELP---SIVVNPTTRW--HRTFPKCNYQLVAADKGERHECFKVACPTPGFGKDKIS 238
Query: 124 DTYKVVLLPQKLKI---------KVFSMGETNWKVTRFSVPYTIINGRVGVHINGTLNWL 174
TYK V L ++ +VF W+ + P+ I++ + V+++G+L+W
Sbjct: 239 GTYKPVWLYNSAELDLNDKPTTCEVFDFATNAWRYVFPASPHLILHTQDPVYVDGSLHWF 298
Query: 175 VSRNNQKFAIMIFSFDLNKE 194
+ +++ M+ S DL+ E
Sbjct: 299 TALSHEG-ETMVLSLDLHSE 317
>AT3G62380.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box
associated interaction domain (InterPro:IPR017451); BEST
Arabidopsis thaliana protein match is: F-box family
protein (TAIR:AT1G71320.1); Has 422 Blast hits to 419
proteins in 26 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink). |
chr3:23083609-23084852 REVERSE LENGTH=325
Length = 325
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 28/206 (13%)
Query: 67 VIGSCNGLICLLGTHLYRIGIKWVLFLNPTTRSMSHKTPEVEIDCVG----------HYG 116
++G CNG++C+ Y +G ++ +NP TR + +PE + G + G
Sbjct: 74 IMGYCNGIVCI-----YDLG--YIYLINPATRKLRILSPEFLREYTGRTGWSNDLPINVG 126
Query: 117 FGYDHVTDTYKVVLL----PQKLKIKVFSMGETNWKVTRFSVPYTII-NGRVGVHINGTL 171
FG D VT TYKV+L+ +K + ++ + F + Y + N + + NG+L
Sbjct: 127 FGRDMVTGTYKVILMYLFDRNFVKTEALNLKNGERRYVYFPISYGQLGNDKRSIFANGSL 186
Query: 172 NWLVSRNNQKFA---IMIFSFDLNKEEHVTFSLPD-IDRHAVTRLLGVLDGFLCVSYVSC 227
WL + + I + + DL+ E LP ++ + L L LCVS V
Sbjct: 187 YWLPKPDVDFYTNQLIKLAAIDLHTETFRYVPLPSWYTKYCKSVYLWSLKDSLCVSDVLQ 246
Query: 228 SSGYNLSIWKMKEFGIDDSWTQLLNI 253
+ ++ +W +++ W ++ ++
Sbjct: 247 NP--SVDVWSLQQEEPSVKWEKMFSV 270
>AT1G32600.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:11794802-11795683 FORWARD
LENGTH=293
Length = 293
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 36/210 (17%)
Query: 68 IGSCNGLICLLGTHLYRIGIKWVLFLNPTTRSMSHKTPEVEIDCVGHY-GFGYDHVTDTY 126
I SC G+ICL + I W PT+ + P ++ + GFGYD V D Y
Sbjct: 45 ILSCRGVICLTRKDNNELAI-W----KPTSTKF-KRVPMIKRGQTQNLLGFGYDRVLDDY 98
Query: 127 KVVLLPQKLKIKVFSMGETNWKVTRFSVPYT--IINGRVGVHINGTLNWLVSR-NNQKFA 183
K+V + K K +F+ E++W+ ++ +P + R G ++ + W+ +R N +KF
Sbjct: 99 KIVTIIDK-KTYIFTFKESSWRESKL-IPSSDCFFKERTGTVVDNCMYWIANRFNKEKF- 155
Query: 184 IMIFSFDLNKEEHVTFSLP------------DIDRH--AVTRLLGVLDGFLCVSYVSCSS 229
I FD EE+ ++P D+ R V +D LCV S
Sbjct: 156 --ILCFDFVNEEYSKLNVPMMLSGLEFNSWLDVSRGELCVINHYPSVDDNLCVCRREIRS 213
Query: 230 GYNLSIWK----MKEFGIDDSWTQLLNIRY 255
G ++ W M G DD + ++IR+
Sbjct: 214 GKKIARWDSDPWMNVAGNDD---EPVDIRF 240
>AT1G71320.1 | Symbols: | F-box family protein |
chr1:26882485-26883818 FORWARD LENGTH=392
Length = 392
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 50/231 (21%)
Query: 67 VIGSCNGLICLLGTHLYRIGIKWVLFLNPTTR--------------SMSHKTPEVE---- 108
V+GSC+GL+ L +R + +NPTT+ ++S+ TP +
Sbjct: 114 VLGSCDGLVLLRIHDDFRS----IYLINPTTKEHMKLSPEFMQWPFTLSYLTPAMANKPW 169
Query: 109 ---IDCVGHY-----------GFGYDHVTDTYKVVLL-------PQKLKIKVFSM--GET 145
V Y GFG D V +YKVVL+ + K KV S+ GE
Sbjct: 170 RQLSQSVLDYDISVKRMPSLAGFGKDIVKKSYKVVLIYTRYEIHDHEFKAKVLSLDNGEQ 229
Query: 146 NWKVTRFSVPYTII-NGRVGVHINGTLNWLVSRNNQKFAIMIFSFDLNKEEHVTFSLPDI 204
V + + + I + + V+ NG+L WL + + + + + DL+ EE LP+
Sbjct: 230 R-DVGFYDIHHCIFCDEQTSVYANGSLFWLTLKKLSQTSYQLLAIDLHTEEFRWILLPEC 288
Query: 205 D-RHAVTRLLGVLDGFLCVSYVSCSSGYNLSIWKMKEFGIDDSWTQLLNIR 254
D ++A + L+ LC+S V SS NL +W + + + W ++ +I+
Sbjct: 289 DTKYATNIEMWNLNERLCLSDVLESS--NLVVWSLHQEYPTEKWEKIYSIK 337
>AT3G16210.1 | Symbols: | F-box family protein |
chr3:5494533-5495615 REVERSE LENGTH=360
Length = 360
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 12/143 (8%)
Query: 116 GFGYDHVTDTYKVVLLPQKLKIK---VFSMGETNW-KVTRFSVPYTIINGRVGVHINGTL 171
GFGYD V D YKVV +L + VF +W + R S P R G ++ L
Sbjct: 134 GFGYDPVHDDYKVVTFIDRLDVSTAHVFEFRTGSWGESLRISYPDWHYRDRRGTFLDQYL 193
Query: 172 NWLVSRNNQKFAIMIFSFDLNKEEHVTFSLPDIDRHAVTRLLGVLDGFLCVS-YVSCSSG 230
W+ R++ I F+L+ E+ LP ++ + LGV LC++ Y C
Sbjct: 194 YWIAYRSSAD--RFILCFNLSTHEYRKLPLPVYNQGVTSSWLGVTSQKLCITEYEMCKKE 251
Query: 231 YNLSIWKMKEFGIDDSWTQLLNI 253
+S+ M++ G SW++++++
Sbjct: 252 IRISV--MEKTG---SWSKIISL 269
>AT3G21410.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:7536719-7537951
REVERSE LENGTH=410
Length = 410
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 124/287 (43%), Gaps = 61/287 (21%)
Query: 60 TLENRYDVIGS------CNGLI-CLLGTHLYRI------GIKWVLFLNPTTRSMSHKTPE 106
+L N++ V G C+GL+ C+ T + ++W+ LNP+ R S
Sbjct: 107 SLPNKFQVKGEIYTMVPCDGLLLCIFETGSMAVWNPCLNQVRWIFLLNPSFRGCS----- 161
Query: 107 VEIDCVGHYGFGYDHVT-DTYKVVLL--------------PQKLKIKVFSMGETNWKVTR 151
C YG GYD ++ D+YK++ K ++ ++ + +WK +
Sbjct: 162 ----C---YGIGYDGLSRDSYKILRFVNGVFTKNEYANTGSYKPEVDIYELKSNSWKTFK 214
Query: 152 FSVPYTIINGRVGVHINGTLNWLVSRNNQKFAIMIFSFDLNKEEHVTF-SLP-DIDRHAV 209
S+ + ++ G+ + G + W +++ N+K I I SF+ + E SLP D H V
Sbjct: 215 VSLDWHVVLRCKGLSLKGNMYW-IAKWNRKPDIFIQSFNFSTETFEPLCSLPVRYDVHNV 273
Query: 210 TRLLGVLDGFLCVSYVSCSSGYNLSIW---KMKEFGIDDSWTQLLNIRYEDLQSHPGMTN 266
L L + + S + + +W K+K G+ WT+L ++ DL
Sbjct: 274 VALSAFKGDNLSLLHQSKETS-KIDVWVTNKVKN-GVSILWTKLFSVTRPDLP------- 324
Query: 267 YQCVMMYYQGLRSDFPLCLFD-NGDFVMLKERLLCNHRDNRVELLQI 312
V++ ++ L +P+ D N V+ E +L + R+ V + I
Sbjct: 325 ---VLLAFENL--SYPVHFIDKNNRIVVCCEEVLADKRNVAVNIYVI 366
>AT1G09650.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:3125978-3127126
FORWARD LENGTH=382
Length = 382
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 86/230 (37%), Gaps = 38/230 (16%)
Query: 22 ANPRVLSVSNVAPFNVSSLPVKSLLKTPHSE----DESHLICTLENRYDVI-GSCNGLIC 76
NP VL VS A N + +L+ S + Y V SC+GL+C
Sbjct: 61 GNPDVLMVSRCADINSEIEALTTLVLGSSSSVKIPTPWEEEEEEDKEYSVSQDSCDGLVC 120
Query: 77 LLGTHLYRIGIKWVLFLNPTTR------SMSHKTPEVEIDC--------VGHYGFGYDHV 122
L ++ G NP TR + + I V GFG D +
Sbjct: 121 LFDK--FKSG----FVFNPATRWYHPLPLCQLQQLLIAIGDGFYDLGYRVSRLGFGKDKL 174
Query: 123 TDTYKVVLLPQKLKI--------KVFSMGETNWKVTRFSVPYTIINGRVGVHINGTLNWL 174
T TYK V L ++I +VF W+ + PY I+ V ++G+L+W
Sbjct: 175 TGTYKPVWLYNSIEIGLENATTCEVFDFSTNAWRYVSPAAPYRIVGCPAPVCVDGSLHWF 234
Query: 175 VSRNNQKFAIMIFSFDLNKEE-HVTFSLPDIDRHAVTRLLGVLDGFLCVS 223
K I SFDL+ E V P + ++ LD LCVS
Sbjct: 235 TECEETK----ILSFDLHTETFQVVSKAPFANVDGFDIVMCNLDNRLCVS 280
>AT1G52490.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain,
cyclin-like (InterPro:IPR001810), F-box domain,
Skp2-like (InterPro:IPR022364), F-box associated domain,
type 3 (InterPro:IPR013187), F-box associated
interaction domain (InterPro:IPR017451); BEST
Arabidopsis thaliana protein match is: F-box and
associated interaction domains-containing protein
(TAIR:AT1G32420.1); Has 1577 Blast hits to 1056 proteins
in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 1577; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:19556218-19559011
REVERSE LENGTH=513
Length = 513
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 105/241 (43%), Gaps = 32/241 (13%)
Query: 90 VLFLNPTTRSMSHKTPEVEIDCVG-----HYGFGYDHVTDTYKVVLL---PQKL--KIKV 139
V NPTTR P++E + H FGYDHV + YKV+ + Q+L V
Sbjct: 71 VTIYNPTTRQCL-PLPKIESMVLSPKRHKHCYFGYDHVMNEYKVLAMVNDSQELTQTFHV 129
Query: 140 FSMGE--TNWKVTRFSVPYTIIN-GRVGVHINGTLNWLVSR--NNQKFA-IMIFSFDLNK 193
F++G W+ R ++ Y +I+ R GV I+GT+ ++ R +N+ + + + SFD+
Sbjct: 130 FTLGRDCPQWRKIRGNIDYELISVSRAGVCIDGTIYYVAVRRKDNENYGELFMMSFDVKS 189
Query: 194 EEHVTFSLPDI--DRHAVTRLLGVLDGFL-CVSYVSCSSGYNLSIWKMKEFGIDDSWTQ- 249
E P+ R L G L C+S S+ N+S+W M E W+
Sbjct: 190 ERFYHVRTPETLWSPKCTERGLFNHQGKLGCIS----SNENNISMWIM-ENAEKQEWSNI 244
Query: 250 ---LLNIRYEDLQSHPGMTNYQCVMMYYQGLRSDFPLCLFDNGDFVMLKERLLCNHRDNR 306
LL D ++ G+T + Y LR+ F L G F ++ R R
Sbjct: 245 TFGLLEYPGGDFRTFSGITPAGEIFKY---LRNYFLLPKGLGGVFYGVRPREFSWKRKTE 301
Query: 307 V 307
V
Sbjct: 302 V 302
>AT2G43445.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr2:18041511-18042995
FORWARD LENGTH=405
Length = 405
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 26/245 (10%)
Query: 3 VCKTWNSLIYDNLSYLRRRA----NPRVLSVSNVAPFNVSSLPVKSLLKTPHSEDESHLI 58
V K W S++ NL RRR +P++L A +N +L E + ++
Sbjct: 36 VSKQWRSILESNLFVERRRTLQKNHPKIL-----AAYNCDYCTRPGILPKSQFEGDEEIV 90
Query: 59 CTLENRYDVIGSCNGLICLLGTHLYRIGIKWVLFLNPTTRSMSHKTPEVEIDCVGHY--G 116
+ +C+GL+C+ W LN +T + P + ++ G
Sbjct: 91 YLHTDATQPSMTCDGLVCITEP-------GWFNVLNVSTGQLRRFLPGPDPGPQANWLLG 143
Query: 117 FGYDHVTDTYKVVLL--PQKLKIKVFSMGETNWKVTRFSVPYTIINGRVGVHINGTLNWL 174
FG D VT YK+V + + + + W S P+ + G V +NG++ WL
Sbjct: 144 FGRDKVTGKYKIVRMCFHDCYEFGILDIESGEWS-KLMSPPHIMRVGSKSVCVNGSIYWL 202
Query: 175 VSRNNQKFAIMIFSFDLNKEE-HVTFSLPDIDRHAVTRLLGVLDGFLCVSYVSCSSGYNL 233
+ +I + DL++E + + LP T+L+ + D + L
Sbjct: 203 ----QISVSYIILALDLHQETFNGVYHLPATWVTQDTQLVNLEDRLAMAMTTKVGPEWIL 258
Query: 234 SIWKM 238
IW M
Sbjct: 259 EIWSM 263
>AT2G43260.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr2:17983744-17985089
REVERSE LENGTH=420
Length = 420
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 79/370 (21%), Positives = 143/370 (38%), Gaps = 61/370 (16%)
Query: 2 LVCKTWNSLIYDNLSYLRRRANPRVLSVSN-----VAPFNVSSLPVKSLLKTPHSEDESH 56
+V K W SL+ + R R +S+ N +A +N + LL E +
Sbjct: 35 IVSKQWRSLLESS------RFAERHMSLQNSRRRILAAYNCDCGGRRKLLPESRFEGDEE 88
Query: 57 LICTLENRYDVIGSCNGLICLLGTHLYRIGIKWVLFLNPTTRSMSHKTPEVEIDC---VG 113
++ + +C G+IC W++ LNP+T + + +C +G
Sbjct: 89 IVYLHCDASRPSMTCQGVICFPEQD-------WIIVLNPSTSQLRRFPSGLNHNCRFRIG 141
Query: 114 HY----------GFGYDHVTDTYKVVLL----------PQKLKIKVFSMGETNWKVTRFS 153
+ GFG D V YKVV + ++ V + W+ + S
Sbjct: 142 LWKTFSPGNWVMGFGRDKVNGRYKVVRMSFAFWRVRQEEPVVECGVLDVDTGEWR--KLS 199
Query: 154 VPYTIIN-GRVGVHINGTLNWLVSRNNQKFAIMIFSFDLNKEEHVTFSLPDIDRHAVTRL 212
P ++N G V +NG++ WL + + I + DL+KEE +P T++
Sbjct: 200 PPPYVVNVGSKSVCVNGSIYWL----HIQTVYRILALDLHKEEFHKVPVPPTQITVDTQM 255
Query: 213 LGVLDGFLCVSYVSCSSGYNLSIWKMKEFGIDDSWTQLLNI---------RYEDLQSHPG 263
+ L+ L ++ S + L +W M + + W++ +I R + P
Sbjct: 256 VN-LEDRLVLAITRVSPEWILEVWGMDTY--KEKWSKTYSISLDHRVVSWRRQKRWFTPV 312
Query: 264 MTNYQCVMMYYQGLRSDFP-LCLFDNGDFVMLKERLLCNHRDNRVELLQIPKNINGFNAV 322
+ Q +++Y + F + D + L +L + +N V L P + +
Sbjct: 313 AVSKQANLVFYDNKKRLFKYYPVKDEIRCLSLDICVLSPYVENLVPLPLKPSHPHPTPKN 372
Query: 323 SYFESFISAC 332
S FE IS C
Sbjct: 373 SDFEMRISRC 382
>AT2G34280.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr2:14470335-14471510
REVERSE LENGTH=391
Length = 391
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 103/288 (35%), Gaps = 88/288 (30%)
Query: 3 VCKTWNSLIY------DNLSYLRRRANPRVLSVSNVAPFNV--------------SSLPV 42
V K W S I L + R+ NP VL VS F + SS+ V
Sbjct: 27 VSKQWRSTIRCRAFQERQLMHRRQSCNPDVLLVSVADEFYLLKRVHQVMRTLVLGSSVSV 86
Query: 43 KSLLKTPHSEDESHLICTLENRYDVIGSCNGLICLLGTHLYRIGIKWVLFLNPTTR---- 98
+ L TP ED + +C SC+GLICL T+ I + NPTTR
Sbjct: 87 RIL--TPW-EDTLYKVCQ--------SSCDGLICLYNTYASNIVV------NPTTRWHRE 129
Query: 99 -------SMSHKTPEVEIDCVGHYGFGYDHVTDTYKVVLLPQKLKI-------------- 137
+ +V GFG D + TYK V L ++
Sbjct: 130 FPLSTFQRLDRYEHQVGSVSWAKLGFGKDKINGTYKPVWLYNSAELGGLNDDDEDYDDED 189
Query: 138 ------------------KVFSMGETNWKVTRFSVPYTIINGRVGVHINGTLNWLVSRNN 179
+VF W+ + PY I+ + V+++G+L+WL
Sbjct: 190 KNNISMICQGNNNTSTFCEVFDFTTKAWRFVVPASPYRILPYQDPVYVDGSLHWLTEGET 249
Query: 180 QKFAIMIFSFDLNKEE-HVTFSLPDIDRHAVTR---LLGVLDGFLCVS 223
+ SFDL+ E V P + H + ++ LD LCVS
Sbjct: 250 TN----VLSFDLHAETFQVVSKAPFLHHHDYSSRELIMCNLDDRLCVS 293