Miyakogusa Predicted Gene

Lj1g3v3063910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3063910.1 CUFF.29984.1
         (360 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15780.1 | Symbols:  | Pollen Ole e 1 allergen and extensin f...   156   2e-38
AT1G29140.1 | Symbols:  | Pollen Ole e 1 allergen and extensin f...    51   2e-06
AT5G41050.1 | Symbols:  | Pollen Ole e 1 allergen and extensin f...    50   3e-06
AT5G13140.1 | Symbols:  | Pollen Ole e 1 allergen and extensin f...    49   4e-06

>AT5G15780.1 | Symbols:  | Pollen Ole e 1 allergen and extensin
           family protein | chr5:5144898-5146297 REVERSE LENGTH=401
          Length = 401

 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/169 (55%), Positives = 121/169 (71%), Gaps = 10/169 (5%)

Query: 3   WFLVVLFLSLT----FGNPTEAIHDKKPPSAVVVGTVYCDTCFQQDFSMG-SHFISGASV 57
           WF +++FL ++         + +  K   SAVVVGTVYCDTCF   FS   +H ISGA V
Sbjct: 10  WFSLMIFLGISINGGLSQGQQHVMKKTRSSAVVVGTVYCDTCFNGAFSKSPNHLISGALV 69

Query: 58  AVECKDGDGSSNSSFKKEVKTDEHGKFRVHLPFSVSKHVKRIKRCSVKLISSSEPYCAVA 117
           AVEC D +  S  SF++EVKTD+ G+F+V LPFSVSKHVK+IKRCSVKL+SSS+PYC++A
Sbjct: 70  AVECIDEN--SKPSFRQEVKTDKRGEFKVKLPFSVSKHVKKIKRCSVKLLSSSQPYCSIA 127

Query: 118 SAATSSSL-HLKSRKQG--LHIFSAGFFSFKPLKQPTLCNQKPRVQKGA 163
           S+ATSSSL  LKS   G    +FSAGFF+F+P  QP +C+QKP   +G+
Sbjct: 128 SSATSSSLKRLKSNHHGENTRVFSAGFFTFRPENQPEICSQKPINLRGS 176


>AT1G29140.1 | Symbols:  | Pollen Ole e 1 allergen and extensin
           family protein | chr1:10179029-10179811 FORWARD
           LENGTH=171
          Length = 171

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 33  GTVYCDTCFQQDFSMGSHFISGASVAVECKDGDGSSNSSFKKEVKTDEHGKFRVHLPFSV 92
           G+VYCDTC  Q  +  S F+ GA V +ECK G  +   +  KE  TD  G +++ +   +
Sbjct: 36  GSVYCDTCRVQFITRISKFLEGAKVKLECK-GRENQTVTLTKEAVTDNAGNYQMEV---M 91

Query: 93  SKHVKRIKRCSVKLISSSEPYCA 115
             H + +  C + L+ S +P C 
Sbjct: 92  GDHEEEV--CEIVLLQSPDPECG 112


>AT5G41050.1 | Symbols:  | Pollen Ole e 1 allergen and extensin
           family protein | chr5:16433478-16434076 REVERSE
           LENGTH=172
          Length = 172

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 13/138 (9%)

Query: 25  KPPSAV-VVGTVYCDTCFQQDFSMGSHFISGASVAVECKDGDGSSNS----SFKKEVKTD 79
           KP   + V+G VYCD C    FS  S+FI G  V + C+    SS +    +F     T+
Sbjct: 28  KPNGKITVMGLVYCDVCSNNSFSNHSYFIPGVEVRIICRFNSASSRTREMITFSANRTTN 87

Query: 80  EHGKFRVHLP----FSVSKHVKR---IKRCSVKLISSSEPYCAV-ASAATSSSLHLKSRK 131
           E G +++ +      + +   K+   +  C   LI  S+  C V     T+  +  KS+ 
Sbjct: 88  ELGLYKLDITSLEGVACAAEAKKDSLMASCQASLIGRSKDSCNVPGFRTTTEQVVFKSKI 147

Query: 132 QGLHIFSAGFFSFKPLKQ 149
             L ++     +F+PL++
Sbjct: 148 SNLCVYGFTALNFRPLEK 165


>AT5G13140.1 | Symbols:  | Pollen Ole e 1 allergen and extensin
           family protein | chr5:4170688-4171744 REVERSE LENGTH=267
          Length = 267

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 23/142 (16%)

Query: 30  VVVGTVYCDTCFQQDFSMGSHFISGASVAVECKDGDGSSNSSFKKEVK----TDEHGKFR 85
            VVG VYCDTC    FS  S+F+ G  V V C+    S  ++ +  +     T+  G ++
Sbjct: 40  TVVGVVYCDTCSINTFSRQSYFLQGVEVHVTCRFKASSPKTAEEVNISVNRTTNRSGVYK 99

Query: 86  VHLPFSVSKHVKRIK---------RCSVKLISSS---EPYCAVASAATSSS-LHLKSRKQ 132
           + +P     HV  I          +CS K++ +S      C++    T+++ + +KS++ 
Sbjct: 100 LEIP-----HVDGIDCVDGIAISSQCSAKILKTSSDDNGGCSIPVFQTATNEVSIKSKQD 154

Query: 133 GLHIFSAGFFSFKPL-KQPTLC 153
            + I+S    S+KP  K  +LC
Sbjct: 155 RVCIYSLSALSYKPPHKNTSLC 176