Miyakogusa Predicted Gene

Lj1g3v3063830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3063830.1 tr|G7JHV9|G7JHV9_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_4g118380 PE=4 SV=1,57.14,0.0002,FAMILY NOT
NAMED,NULL; A Receptor for Ubiquitination Targets,F-box domain,
cyclin-like; F_box_assoc_,CUFF.30021.1
         (416 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ...    91   1e-18
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ...    91   1e-18
AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    91   2e-18
AT4G22390.1 | Symbols:  | F-box associated ubiquitination effect...    71   1e-12
AT3G16210.1 | Symbols:  | F-box family protein | chr3:5494533-54...    57   2e-08

>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 134/297 (45%), Gaps = 35/297 (11%)

Query: 40  KSVSKPWLFLISDPQFGKSR-YDLAAALTHRCLANHNDSEIESIDIDAASLHNYESSVVN 98
           +++SKP   LI+DP F +S  + +     H  +       + S+D+D+        SV +
Sbjct: 25  RALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGALRLYSVDLDSLD------SVSD 78

Query: 99  LKYPLSSPPHENNPVDFLGSCRGFILVAYGRGNVIVWNPSTRVRRRIAD------NLEWM 152
           +++P+        P +  GS  G I ++    ++ V+NPSTR   R+        +    
Sbjct: 79  VEHPMK----RGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSST 134

Query: 153 KFHFLNGFGYDTSTDDYLLVRIEVNLWETYIYSQQDPDIITNHPTRIRLFSMKTNSWFYL 212
           + +   G GYD+ +DDY +VR+             + ++  + P  +++FS+K NSW  +
Sbjct: 135 RGYVFYGLGYDSVSDDYKVVRM------VQFKIDSEDELGCSFPYEVKVFSLKKNSWKRI 188

Query: 213 EGAYAQYADLGHCEFKV------GSFLNEALHWFVTSVE--TSNHAIIAFDLVERSLSEI 264
           E   +    L +  + +      G     +LHW +       + + I+ FDL       +
Sbjct: 189 ESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIV 248

Query: 265 PLSQILARELECREYHLRVMGECLSLCCPGDQYDVASMAEIWMMKKYKVQSSWTKLF 321
              + +A      +  + V+  CL L C  DQ    S  ++WMMK+Y V+ SWTK+F
Sbjct: 249 RFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQ----SYVDVWMMKEYNVRDSWTKVF 301


>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 134/297 (45%), Gaps = 35/297 (11%)

Query: 40  KSVSKPWLFLISDPQFGKSR-YDLAAALTHRCLANHNDSEIESIDIDAASLHNYESSVVN 98
           +++SKP   LI+DP F +S  + +     H  +       + S+D+D+        SV +
Sbjct: 25  RALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGALRLYSVDLDSLD------SVSD 78

Query: 99  LKYPLSSPPHENNPVDFLGSCRGFILVAYGRGNVIVWNPSTRVRRRIAD------NLEWM 152
           +++P+        P +  GS  G I ++    ++ V+NPSTR   R+        +    
Sbjct: 79  VEHPMK----RGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSST 134

Query: 153 KFHFLNGFGYDTSTDDYLLVRIEVNLWETYIYSQQDPDIITNHPTRIRLFSMKTNSWFYL 212
           + +   G GYD+ +DDY +VR+             + ++  + P  +++FS+K NSW  +
Sbjct: 135 RGYVFYGLGYDSVSDDYKVVRM------VQFKIDSEDELGCSFPYEVKVFSLKKNSWKRI 188

Query: 213 EGAYAQYADLGHCEFKV------GSFLNEALHWFVTSVE--TSNHAIIAFDLVERSLSEI 264
           E   +    L +  + +      G     +LHW +       + + I+ FDL       +
Sbjct: 189 ESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIV 248

Query: 265 PLSQILARELECREYHLRVMGECLSLCCPGDQYDVASMAEIWMMKKYKVQSSWTKLF 321
              + +A      +  + V+  CL L C  DQ    S  ++WMMK+Y V+ SWTK+F
Sbjct: 249 RFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQ----SYVDVWMMKEYNVRDSWTKVF 301


>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD LENGTH=427
          Length = 427

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 146/347 (42%), Gaps = 70/347 (20%)

Query: 39  FKSVSKPWLFLISDPQFGKSRYDL-----AAALTHRCL--ANHNDSEIESIDIDAASLHN 91
           F+ VSK +  L SDP F K   DL     +    HR L  ++HN   + S+D ++     
Sbjct: 56  FRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIVSSHN---LYSLDFNSIGDGI 112

Query: 92  YESSVVNLKYPLSSPP-----------------------------HENNPVDFLGSCRGF 122
            + + V   YPL   P                             +  N V+ +GS  G 
Sbjct: 113 RDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLNAKSYRRNWVEIVGSSNGL 172

Query: 123 ILVAYGRGNVIVWNPSTRVRRRIADN-----LEWMKFHFLN-GFGYDTSTDDYLLVRIEV 176
           + ++ G G V ++NP+T   +R+ +N     +E+ + +F   GFG+D  TDDY LV++  
Sbjct: 173 VCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDDYKLVKL-- 230

Query: 177 NLWETYIYSQQDPDIITNHPTRIRLFSMKTNSWFYLEGAYAQYADLGHCEFKVGSFLNEA 236
                        DI+        ++S+K +SW  +     ++ D     +  G   N A
Sbjct: 231 --------VATSEDILD-----ASVYSLKADSWRRICNLNYEHND---GSYTSGVHFNGA 274

Query: 237 LHWFVTSVETSNHAIIAFDLVERSLSEIPLSQILARELECREYHLRVMGECLSLCCPGDQ 296
           +HW  T    +   ++AFD+      E+P+    A +   R  +  V      LC     
Sbjct: 275 IHWVFTESRHNQRVVVAFDIQTEEFREMPVPD-EAEDCSHRFSNFVVGSLNGRLCVVNSC 333

Query: 297 YDVASMAEIWMMKKYKVQSSWTKLFVFSTCNIPHNMFFPICFTKHGE 343
           YDV    +IW+M +Y    SW+++ +    N+ +    P+C TK+ E
Sbjct: 334 YDVHD--DIWVMSEYGEAKSWSRIRI----NLLYRSMKPLCSTKNDE 374


>AT4G22390.1 | Symbols:  | F-box associated ubiquitination effector
           family protein | chr4:11813757-11815074 REVERSE
           LENGTH=402
          Length = 402

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 47/301 (15%)

Query: 40  KSVSKPWLFLISDPQFGKS--RYDLAAALTHRCLANHNDSEIESIDIDAASLHNYESSVV 97
           + +SKP   LI  P+F  S  R  L     H  +       + ++++D+        +V 
Sbjct: 25  RVLSKPCFSLIDSPEFVSSHLRRRLETG-EHLMILLRGPRLLRTVELDSPE------NVS 77

Query: 98  NLKYPLSSPPHENNPVDFLGSCRGFILVAYGRGNVIVWNPSTRVRRRIADNLEWMKF--- 154
           ++ +PL +        +  GS  G I +     ++ ++NPSTR   R+   +E + F   
Sbjct: 78  DIPHPLQA----GGFTEVFGSFNGVIGLCNSPVDLAIFNPSTRKIHRLP--IEPIDFPER 131

Query: 155 -----HFLNGFGYDTSTDDYLLVRI-EVNLWETYIYSQQDPDIITNHPTRIRLFSMKTNS 208
                +   G GYD+  DD+ +VRI +  L E     ++ P      P  +++FS+K NS
Sbjct: 132 DITREYVFYGLGYDSVGDDFKVVRIVQCKLKEG---KKKFP-----CPVEVKVFSLKKNS 183

Query: 209 W------FYLEGAYAQYADLGHCEFKVGSFLNEALHWFVTSVE--TSNHAIIAFDLVERS 260
           W      F  +  +  Y          G  +N  LHW +   +   + +AII +DL    
Sbjct: 184 WKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYDLASDD 243

Query: 261 LSEIPLSQILARELECREYHLRVMGECLSLCCPGDQYDVASMAEIWMMKKYKVQSSWTKL 320
           +  +   Q L  E       + V+  C+ L C    YD  S  ++W++K+Y+   SWTKL
Sbjct: 244 IGVLSFPQELYIE---DNMDIGVLDGCVCLMC----YDEYSHVDVWVLKEYEDYKSWTKL 296

Query: 321 F 321
           +
Sbjct: 297 Y 297


>AT3G16210.1 | Symbols:  | F-box family protein |
           chr3:5494533-5495615 REVERSE LENGTH=360
          Length = 360

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 102/252 (40%), Gaps = 31/252 (12%)

Query: 15  LSSILPHDXXXXXXXXXXXXXXXXFKSVSKPWLFLISDPQFGKSRYDLAAALTHRCLANH 74
           +S  LP +                F+ V K W  LI+DP F ++  D++ A       + 
Sbjct: 1   MSKFLPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMSPAK----FVSF 56

Query: 75  NDSEIESIDIDAASLHNYESSVVNLKYPLSSPPHENNPVDFLGSCRGFILVAYGRGNVIV 134
            D     +D++      +      L +PL     + +    +  C G + V      ++V
Sbjct: 57  YDKNFYMLDVEG----KHPVITNKLDFPLDQSMIDESTC--VLHCDGTLCVTLKNHTLMV 110

Query: 135 WNPSTRVRRRIADNLEWMKFHFLNGFGYDTSTDDYLLVRIEVNLWETYIYSQQDPDIITN 194
           WNP ++ + +I  N    +   + GFGYD   DDY +V     L           D+ T 
Sbjct: 111 WNPFSK-QFKIVPNPGIYQDSNILGFGYDPVHDDYKVVTFIDRL-----------DVSTA 158

Query: 195 HPTRIRLFSMKTNSWFYLEGAYAQYADLGHCEFKVGSFLNEALHWFVTSVETSNHAIIAF 254
           H     +F  +T SW   E     Y D  H   + G+FL++ L+W +    +++  I+ F
Sbjct: 159 H-----VFEFRTGSWG--ESLRISYPDW-HYRDRRGTFLDQYLYW-IAYRSSADRFILCF 209

Query: 255 DLVERSLSEIPL 266
           +L      ++PL
Sbjct: 210 NLSTHEYRKLPL 221