Miyakogusa Predicted Gene
- Lj1g3v3053750.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3053750.2 tr|F6KSN1|F6KSN1_FRAAN MADS-1 OS=Fragaria
ananassa PE=2 SV=1,53.93,4e-19, ,CUFF.29966.2
(89 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02310.1 | Symbols: SEP2, AGL4 | K-box region and MADS-box tr... 86 4e-18
AT5G15800.1 | Symbols: SEP1, AGL2 | K-box region and MADS-box tr... 84 1e-17
AT5G15800.2 | Symbols: SEP1, AGL2 | K-box region and MADS-box tr... 82 8e-17
AT1G24260.2 | Symbols: SEP3, AGL9 | K-box region and MADS-box tr... 59 8e-10
AT1G24260.1 | Symbols: SEP3, AGL9 | K-box region and MADS-box tr... 59 8e-10
AT2G03710.1 | Symbols: SEP4, AGL3 | K-box region and MADS-box tr... 53 5e-08
AT2G03710.2 | Symbols: SEP4, AGL3 | K-box region and MADS-box tr... 48 1e-06
>AT3G02310.1 | Symbols: SEP2, AGL4 | K-box region and MADS-box
transcription factor family protein |
chr3:464554-466687 REVERSE LENGTH=250
Length = 250
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 64/91 (70%), Gaps = 6/91 (6%)
Query: 1 MLDQLSDLQNKEQMLVEANRSLSVKLDD-INSRNHY-RQSWDQAGDQSMQYGGSQNAHSQ 58
MLDQLSDLQ KE +L++ANR+LS+KL+D I R+H+ W+ Q++ YG Q AHSQ
Sbjct: 147 MLDQLSDLQGKEHILLDANRALSMKLEDMIGVRHHHIGGGWEGGDQQNIAYGHPQ-AHSQ 205
Query: 59 GFFQPLECNPTLQIGSDYRYNGVASDQMAAT 89
G +Q LEC+PTLQIG + V S+QMA T
Sbjct: 206 GLYQSLECDPTLQIGYSH---PVCSEQMAVT 233
>AT5G15800.1 | Symbols: SEP1, AGL2 | K-box region and MADS-box
transcription factor family protein |
chr5:5151594-5153767 REVERSE LENGTH=251
Length = 251
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 64/89 (71%), Gaps = 7/89 (7%)
Query: 1 MLDQLSDLQNKEQMLVEANRSLSVKLDD-INSRNHY--RQSWDQAGDQSMQYGGSQNAHS 57
MLDQLSDLQNKEQML+E NR+L++KLDD I R+H+ + G+Q++ Y Q A S
Sbjct: 147 MLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRSHHMGGGGGWEGGEQNVTYAHHQ-AQS 205
Query: 58 QGFFQPLECNPTLQIGSDYRYNGVASDQM 86
QG +QPLECNPTLQ+G D N V S+Q+
Sbjct: 206 QGLYQPLECNPTLQMGYD---NPVCSEQI 231
>AT5G15800.2 | Symbols: SEP1, AGL2 | K-box region and MADS-box
transcription factor family protein |
chr5:5151594-5153767 REVERSE LENGTH=262
Length = 262
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 66/97 (68%), Gaps = 12/97 (12%)
Query: 1 MLDQLSDLQNKEQMLVEANRSLSVKLDD-INSRNHY--RQSWDQAGDQSMQYGGSQNAHS 57
MLDQLSDLQNKEQML+E NR+L++KLDD I R+H+ + G+Q++ Y Q A S
Sbjct: 147 MLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRSHHMGGGGGWEGGEQNVTYAHHQ-AQS 205
Query: 58 QGFFQPLECNPTLQIGSDY-------RY-NGVASDQM 86
QG +QPLECNPTLQ+G + RY N V S+Q+
Sbjct: 206 QGLYQPLECNPTLQMGCCFGDDDDDDRYDNPVCSEQI 242
>AT1G24260.2 | Symbols: SEP3, AGL9 | K-box region and MADS-box
transcription factor family protein |
chr1:8593790-8595862 REVERSE LENGTH=251
Length = 251
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%)
Query: 1 MLDQLSDLQNKEQMLVEANRSLSVKLDDINSRNHYRQSWDQAGDQSMQYGGSQNAHSQGF 60
MLDQL+DLQ+KE+ML E N++L ++L D + D ++ Q HSQ F
Sbjct: 150 MLDQLNDLQSKERMLTETNKTLRLRLADGYQMPLQLNPNQEEVDHYGRHHHQQQQHSQAF 209
Query: 61 FQPLECNPTLQIG 73
FQPLEC P LQIG
Sbjct: 210 FQPLECEPILQIG 222
>AT1G24260.1 | Symbols: SEP3, AGL9 | K-box region and MADS-box
transcription factor family protein |
chr1:8593790-8595862 REVERSE LENGTH=250
Length = 250
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%)
Query: 1 MLDQLSDLQNKEQMLVEANRSLSVKLDDINSRNHYRQSWDQAGDQSMQYGGSQNAHSQGF 60
MLDQL+DLQ+KE+ML E N++L ++L D + D ++ Q HSQ F
Sbjct: 149 MLDQLNDLQSKERMLTETNKTLRLRLADGYQMPLQLNPNQEEVDHYGRHHHQQQQHSQAF 208
Query: 61 FQPLECNPTLQIG 73
FQPLEC P LQIG
Sbjct: 209 FQPLECEPILQIG 221
>AT2G03710.1 | Symbols: SEP4, AGL3 | K-box region and MADS-box
transcription factor family protein |
chr2:1129622-1131628 FORWARD LENGTH=258
Length = 258
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 1 MLDQLSDLQNKEQMLVEANRSLSVKLDDINSRNHYRQS-WDQAGDQSMQ----------- 48
MLDQLSDL+ KE+ML+E NR L KL+D ++ QS W + + Q
Sbjct: 147 MLDQLSDLKTKEEMLLETNRDLRRKLEDSDA--ALTQSFWGSSAAEQQQQHQQQQQGMSS 204
Query: 49 YGGSQNAHSQGFFQPLECNPTLQIGSDYRYNGVASDQMAAT 89
Y + GFF+PL+ N LQ+ S Y +N + A T
Sbjct: 205 YQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANATNSATT 245
>AT2G03710.2 | Symbols: SEP4, AGL3 | K-box region and MADS-box
transcription factor family protein |
chr2:1129622-1131628 FORWARD LENGTH=257
Length = 257
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 15/101 (14%)
Query: 1 MLDQLSDLQNKEQMLVEANRSLSVKLDDINSRNHYRQS-WDQAGDQSMQ----------- 48
MLDQLSDL+ KE+ML+E NR L KL+D ++ QS W + + Q
Sbjct: 147 MLDQLSDLKTKEEMLLETNRDLRRKLEDSDA--ALTQSFWGSSAAEQQQQHQQQQQGMSS 204
Query: 49 YGGSQNAHSQGFFQPLECNPTLQIGSDYRYNGVASDQMAAT 89
Y + GFF+PL+ N LQ+ S Y +N + A T
Sbjct: 205 YQSNPPIQEAGFFKPLQGNVALQM-SHYNHNPANATNSATT 244