Miyakogusa Predicted Gene

Lj1g3v3028300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3028300.1 Non Chatacterized Hit- tr|F4Q4B9|F4Q4B9_DICFS
Putative uncharacterized protein OS=Dictyostelium
fasc,40.71,3e-19,KOW,KOW; no description,Ribosomal protein L24,
SH3-like; MITOCHONDRIAL RIBOSOMAL PROTEIN L24,Ribosom,CUFF.29937.1
         (159 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23535.1 | Symbols:  | KOW domain-containing protein | chr5:7...   271   1e-73
AT5G54600.1 | Symbols:  | Translation protein SH3-like family pr...    64   4e-11

>AT5G23535.1 | Symbols:  | KOW domain-containing protein |
           chr5:7935871-7937127 FORWARD LENGTH=159
          Length = 159

 Score =  271 bits (694), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/159 (82%), Positives = 145/159 (91%)

Query: 1   MGWKAAEKLIRNWKIVRGDNVMIIRGKDKGETGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIR+WKI+RGDNVMIIRGKDKGETG IKRVIRSQNRVIVEGKNL+KKHIK G
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGG 60

Query: 61  QGHEGGIFTVEAPIHASNVQVRDPVTGNPCKIGIKYLEDGTRVRVSRGIGASGSIIPRPE 120
             HEGGIFTVEAP+HASNVQV DPVTG PCK+G+KYLEDGT+VRV+RG G SGSIIPRPE
Sbjct: 61  PDHEGGIFTVEAPLHASNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTGTSGSIIPRPE 120

Query: 121 ILKIRTTARPSVLGPRDTPMDLVVEKTYDAKTGRGMPEL 159
           ILKIR T RP+  GP+DTPM+ V E+TYDAKTG+GMP+L
Sbjct: 121 ILKIRATPRPTTAGPKDTPMEFVWEQTYDAKTGKGMPDL 159


>AT5G54600.1 | Symbols:  | Translation protein SH3-like family
           protein | chr5:22183046-22184403 FORWARD LENGTH=198
          Length = 198

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 1/107 (0%)

Query: 18  GDNVMIIRGKDKGETGLIKRVIRSQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPIHA 76
           GD V +I G+DKG+ G + ++    + ++++  NL  KH+K + +G  G I  +EAPIH+
Sbjct: 76  GDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREEGEPGQIVKIEAPIHS 135

Query: 77  SNVQVRDPVTGNPCKIGIKYLEDGTRVRVSRGIGASGSIIPRPEILK 123
           SNV +         ++G K LEDG +VR     G     I + ++LK
Sbjct: 136 SNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKLLK 182