Miyakogusa Predicted Gene
- Lj1g3v3028300.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3028300.1 Non Chatacterized Hit- tr|F4Q4B9|F4Q4B9_DICFS
Putative uncharacterized protein OS=Dictyostelium
fasc,40.71,3e-19,KOW,KOW; no description,Ribosomal protein L24,
SH3-like; MITOCHONDRIAL RIBOSOMAL PROTEIN L24,Ribosom,CUFF.29937.1
(159 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23535.1 | Symbols: | KOW domain-containing protein | chr5:7... 271 1e-73
AT5G54600.1 | Symbols: | Translation protein SH3-like family pr... 64 4e-11
>AT5G23535.1 | Symbols: | KOW domain-containing protein |
chr5:7935871-7937127 FORWARD LENGTH=159
Length = 159
Score = 271 bits (694), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 145/159 (91%)
Query: 1 MGWKAAEKLIRNWKIVRGDNVMIIRGKDKGETGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60
MGWKAAEKLIR+WKI+RGDNVMIIRGKDKGETG IKRVIRSQNRVIVEGKNL+KKHIK G
Sbjct: 1 MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGG 60
Query: 61 QGHEGGIFTVEAPIHASNVQVRDPVTGNPCKIGIKYLEDGTRVRVSRGIGASGSIIPRPE 120
HEGGIFTVEAP+HASNVQV DPVTG PCK+G+KYLEDGT+VRV+RG G SGSIIPRPE
Sbjct: 61 PDHEGGIFTVEAPLHASNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTGTSGSIIPRPE 120
Query: 121 ILKIRTTARPSVLGPRDTPMDLVVEKTYDAKTGRGMPEL 159
ILKIR T RP+ GP+DTPM+ V E+TYDAKTG+GMP+L
Sbjct: 121 ILKIRATPRPTTAGPKDTPMEFVWEQTYDAKTGKGMPDL 159
>AT5G54600.1 | Symbols: | Translation protein SH3-like family
protein | chr5:22183046-22184403 FORWARD LENGTH=198
Length = 198
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 18 GDNVMIIRGKDKGETGLIKRVIRSQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPIHA 76
GD V +I G+DKG+ G + ++ + ++++ NL KH+K + +G G I +EAPIH+
Sbjct: 76 GDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREEGEPGQIVKIEAPIHS 135
Query: 77 SNVQVRDPVTGNPCKIGIKYLEDGTRVRVSRGIGASGSIIPRPEILK 123
SNV + ++G K LEDG +VR G I + ++LK
Sbjct: 136 SNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKLLK 182