Miyakogusa Predicted Gene
- Lj1g3v3025190.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3025190.1 Non Chatacterized Hit- tr|D7M7E1|D7M7E1_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,35.58,9e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.29932.1
(573 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G74160.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 135 9e-32
AT3G02170.1 | Symbols: LNG2 | longifolia2 | chr3:396208-399393 R... 109 4e-24
AT5G15580.1 | Symbols: LNG1 | longifolia1 | chr5:5068495-5071930... 104 2e-22
AT1G18620.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 77 4e-14
AT1G18620.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 76 5e-14
>AT1G74160.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins
in 314 species: Archae - 0; Bacteria - 264; Metazoa -
1296; Fungi - 318; Plants - 346; Viruses - 34; Other
Eukaryotes - 1149 (source: NCBI BLink). |
chr1:27887164-27891151 FORWARD LENGTH=1025
Length = 1025
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 136/425 (32%), Positives = 194/425 (45%), Gaps = 92/425 (21%)
Query: 14 EFNRTIQTESPPKSQIRVAINPPSEITMKQHDTPSQKSLEFCDIVKDSMYREAQGLSLKT 73
EFNR +Q ++ + +P S+ M + + S L+ D+V+DSMYREA+GL KT
Sbjct: 106 EFNRGVQPDASAYDRANFQESPTSDPEMTEGNGFSHLGLDLRDVVRDSMYREARGLLSKT 165
Query: 74 -ATKEKKKGQTHTLKHIDSPRPLQPHKSINGGVTAANEPFHVLSKSKKSPW--------D 124
T+E+ Q+ + DSPRP +S + NE F VL++ +++ D
Sbjct: 166 PMTREEVVRQS---RREDSPRPYGLKQSTPMDL---NESFRVLARLRETSQHYNELGMKD 219
Query: 125 LPRLSYDGRDTQDKFKSATKHKELPRLSLDSRQGSTRGFNEGNKAHNLLKDPQKVYGIGR 184
PR S D DT KS K KELPRLSLDSR+ +TR + K+ L
Sbjct: 220 APRYSVDSHDT---LKSRQKLKELPRLSLDSRERATRNSSVDPKSSKL------------ 264
Query: 185 NYNTVLNNLQEPETSKRSSCVVAKLMGLEALP-------------QKTQTCGSSDDTITN 231
+ + + KR VVAKLMGLE LP KT +DD +
Sbjct: 265 --SESFSESCSSSSKKRPPSVVAKLMGLETLPGSPLGRDIHQFGLNKTNISDQNDDPFSR 322
Query: 232 ------------------------------------VTPYS--RFALEPSPWRKPDSRRS 253
+ P S RF +EP+PW+ D R
Sbjct: 323 SLREKNLNRAIRFSPSSPRSLGKDPASPRWRNSDFVMKPLSNTRFPVEPAPWKHADRNRV 382
Query: 254 LQSQDSKGSESD-IKASKSSLSVYGEIEKRVSELEFKRSGKDLRALKQILDAMQR--YKD 310
LQ Q S ++ +A +VY E+E+R+++LEFK SGKDLRALKQIL++MQ + D
Sbjct: 383 LQKQASMPVKAKPYEAPNFPPTVYSEMERRLNDLEFKHSGKDLRALKQILESMQSKGFLD 442
Query: 311 TSDIARDQALNSPSNNQNNTSISENSNVRSPRIPQKDPASVTVEKSNSSKMPIVIMKPAR 370
T + + + S + N + S R + +S V +S PIVIMKPA+
Sbjct: 443 TEKQQQSTNFAVQRDYERENSATSN-HAMSSRTRVQSSSSNQVYQS-----PIVIMKPAK 496
Query: 371 VTRKA 375
+ KA
Sbjct: 497 LVEKA 501
>AT3G02170.1 | Symbols: LNG2 | longifolia2 | chr3:396208-399393
REVERSE LENGTH=905
Length = 905
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 133/456 (29%), Positives = 196/456 (42%), Gaps = 118/456 (25%)
Query: 127 RLSYDGRDTQDK-FKSATKHKELPRLSLDSRQGSTRGFNEGNKAHNLLKDPQKVYGIGRN 185
RLSYD R+ ++ F+ +K KE PRLSLDSR S R + ++P +
Sbjct: 208 RLSYDEREMRNNGFRVGSKLKETPRLSLDSRSNSFRSPRADAARSSCPEEPATM------ 261
Query: 186 YNTVLNNLQEPETSKR-SSCVVAKLMGLEALPQKTQT--------CGS------------ 224
T +R SS VVAKLMGLE + + T C S
Sbjct: 262 ------------THRRSSSSVVAKLMGLEVIADNSDTEQRRENRFCDSPRPMSRVEPTAL 309
Query: 225 ----SDDTITNV--TPYSRFALEPSPWRKPDSRRSLQSQDSKGSESDIKASKSSLSVYGE 278
S D+I + + S+F +EP+PW++ +KA S+L+VYGE
Sbjct: 310 QRSRSVDSIKRIPASAASKFPMEPAPWKQ------------------MKAGDSALTVYGE 351
Query: 279 IEKRVSELEFKRSGKDLRALKQILDAMQRYKDTSDIARDQALNSPSNNQNNTSISENSNV 338
I+KR+++LEFK+SGKDLRALKQIL+AM++ + D +RD S + T
Sbjct: 352 IQKRLTQLEFKKSGKDLRALKQILEAMEKTQQLIDESRDDGTLSTTTLMQRT-------- 403
Query: 339 RSPRIPQKDPASVTVEKSNSSKMPIVIMKPARVTRKANNSSPPSTPRNGRLVD------K 392
K ++ T N IV+MK A A S+ P P+N L + +
Sbjct: 404 ------HKPVSAATSPARNFKSSSIVVMKSA-----APVSTSP-LPQNVTLPNVKVGNSR 451
Query: 393 QTAKGIXXXXXXXXXXXXXXXXXKLMQSSKVSQDGNGES----TANSGNMTVTG------ 442
QT K + S+K + S A++G+MT +G
Sbjct: 452 QTRKVTSGKQNAMDLTPRPGLYKGQLDSTKSNSPKTVRSRQALAADAGSMTKSGRSQQHS 511
Query: 443 -SPRLQ-KKFGLERRXXXXXXXXXXXINRRKHNRQPVELSSPR--QNI---STLPERNER 495
SPR Q KK G E++ +R+ RQ E++SPR Q I STL + ++R
Sbjct: 512 VSPRTQPKKLGFEKQTRPTTPKSEP--GKRQLGRQQTEVASPRRKQMIKPHSTLQQPDDR 569
Query: 496 FGDISYHWKGVMHHVNVISPDFDRKRSLATHSDIEI 531
D + + N+ SL ++ DIE+
Sbjct: 570 LSDARSDLRSLRSDSNI---------SLGSNVDIEV 596
>AT5G15580.1 | Symbols: LNG1 | longifolia1 | chr5:5068495-5071930
REVERSE LENGTH=927
Length = 927
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 131/270 (48%), Gaps = 71/270 (26%)
Query: 124 DLPRLSYDGRDTQDKFKSATKHKELPRLSLDSRQGSTRGFNEGNKAHNLLKDPQKVYGIG 183
D PR SYD R+T+ K+ K KE PRLSLDSR S R + + +PQ++
Sbjct: 204 DSPRFSYDERETR---KTGAKLKETPRLSLDSRSNSFR-----SARSSCSPEPQELVTGH 255
Query: 184 RNYNTVLNNLQEPETSKRSSCVVAKLMGLEALPQKTQT--------CGS----------- 224
R + +S VVAKLMGLE +P + T C S
Sbjct: 256 R---------------RTTSSVVAKLMGLEVIPDEPVTIQNRENRFCDSPRPTSRVEVDL 300
Query: 225 ----SDDTITNVTPYSRFALEPSPWRKPDSRRSLQSQDSKGSESDIKA-SKSSLSVYGEI 279
D+I + P ++F ++ SPW + D G+++ +K ++L+VYGEI
Sbjct: 301 QRSRGFDSIKKMMP-AKFPMKASPWAQVD-----------GAKNQVKIPDATTLTVYGEI 348
Query: 280 EKRVSELEFKRSGKDLRALKQILDAMQRYKDTSDIARDQALNSPSNNQNNTSISENSNVR 339
+KR+S+LEFK+S KDLRALKQIL+AM++ Q L S ++ N T S N R
Sbjct: 349 QKRLSQLEFKKSEKDLRALKQILEAMEKT---------QQLISKDDDDNKTLCSSNFMQR 399
Query: 340 SPRIPQKDPASVTVEKSNSSKMPIVIMKPA 369
+ Q P+++ N IV+MK A
Sbjct: 400 N---NQPIPSAINTSSMNFKSSSIVVMKAA 426
>AT1G18620.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G74160.1); Has 1987 Blast hits to 1263 proteins
in 207 species: Archae - 0; Bacteria - 172; Metazoa -
665; Fungi - 149; Plants - 271; Viruses - 6; Other
Eukaryotes - 724 (source: NCBI BLink). |
chr1:6410719-6414269 FORWARD LENGTH=978
Length = 978
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 107/417 (25%), Positives = 173/417 (41%), Gaps = 102/417 (24%)
Query: 14 EFNRTIQTESPPKSQIRVAINPPSEITMKQHDTPSQKSLEFCDIVKDSMYREAQGLSLKT 73
E NR +Q E ++ +P S+ M Q T ++ L+ D+V+DSMYREA+GLS
Sbjct: 112 EVNREVQPEISADDRVIFPESPTSDPVMSQ-GTGARVGLDLRDVVRDSMYREARGLS--D 168
Query: 74 ATKEKKKGQTHTLKHIDSPRP--LQPHKSINGGVTAANEPFHVLSKSKKSPW-------- 123
++ ++ DSPRP L+ + ++ NE L+K +K+
Sbjct: 169 VCRQNRRE--------DSPRPYGLKQSRPVD-----FNESCRALAKLRKTSHHYYNEVDM 215
Query: 124 ---------------------DLPRLSYDGRDTQDKFKSATK--HKELPRLSLDSRQGST 160
+LPRLS D RD D KS K S++ GS
Sbjct: 216 KDTSRYYVDSRGKSKSGKKLKELPRLSLDSRDHVD-LKSGNKLSESFSRSSSMNKVSGSP 274
Query: 161 R----------------GFNEGNKAHNLLKDPQKVYGIGRNYNTVLNNLQEPETSKRSSC 204
+ G N+ D + N++ +L+ +S RS
Sbjct: 275 KRPPSVVAKLMGLETLPGSPLSRDRFNMFDDNSDPFARSLRENSLNRSLRFSPSSPRS-- 332
Query: 205 VVAKLMGLEALPQKTQTCGSSDDTITNVTPYSRFALEPSPWRKPDSRRSLQSQDSKGSES 264
+G + + S + + R+ +EP+PW++ + R Q Q
Sbjct: 333 -----LGKDPAASSSSPRWRSSEFVMKPLSSLRYPIEPAPWKQTERNRFSQKQ------- 380
Query: 265 DIKASKSSLSVYGEIEKRVSELEFKRSGKDLRALKQILDAMQRYKDTSDIARDQALNSPS 324
A +S S+ +E ++ +LE K SGKDLRALK IL+AMQ K D + Q ++
Sbjct: 381 ---ACRSVKSLSQSMEGKLKDLEVKHSGKDLRALKDILEAMQS-KGLFDTRKQQQCSNLE 436
Query: 325 NNQN------NTSISENSNVRSPRIPQKDPASVTVEKSNSSKMPIVIMKPARVTRKA 375
++ TS ++ ++R+P IP ++ + PIVIMKPAR+ K+
Sbjct: 437 AQRDYELADSATSKHDSIDLRNPVIP------------SNMRGPIVIMKPARLVEKS 481
>AT1G18620.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G74160.1); Has 1906 Blast hits to 1265 proteins
in 203 species: Archae - 0; Bacteria - 130; Metazoa -
671; Fungi - 139; Plants - 265; Viruses - 11; Other
Eukaryotes - 690 (source: NCBI BLink). |
chr1:6410191-6414269 FORWARD LENGTH=1014
Length = 1014
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 107/417 (25%), Positives = 173/417 (41%), Gaps = 102/417 (24%)
Query: 14 EFNRTIQTESPPKSQIRVAINPPSEITMKQHDTPSQKSLEFCDIVKDSMYREAQGLSLKT 73
E NR +Q E ++ +P S+ M Q T ++ L+ D+V+DSMYREA+GLS
Sbjct: 148 EVNREVQPEISADDRVIFPESPTSDPVMSQ-GTGARVGLDLRDVVRDSMYREARGLS--D 204
Query: 74 ATKEKKKGQTHTLKHIDSPRP--LQPHKSINGGVTAANEPFHVLSKSKKSPW-------- 123
++ ++ DSPRP L+ + ++ NE L+K +K+
Sbjct: 205 VCRQNRRE--------DSPRPYGLKQSRPVD-----FNESCRALAKLRKTSHHYYNEVDM 251
Query: 124 ---------------------DLPRLSYDGRDTQDKFKSATK--HKELPRLSLDSRQGST 160
+LPRLS D RD D KS K S++ GS
Sbjct: 252 KDTSRYYVDSRGKSKSGKKLKELPRLSLDSRDHVD-LKSGNKLSESFSRSSSMNKVSGSP 310
Query: 161 R----------------GFNEGNKAHNLLKDPQKVYGIGRNYNTVLNNLQEPETSKRSSC 204
+ G N+ D + N++ +L+ +S RS
Sbjct: 311 KRPPSVVAKLMGLETLPGSPLSRDRFNMFDDNSDPFARSLRENSLNRSLRFSPSSPRS-- 368
Query: 205 VVAKLMGLEALPQKTQTCGSSDDTITNVTPYSRFALEPSPWRKPDSRRSLQSQDSKGSES 264
+G + + S + + R+ +EP+PW++ + R Q Q
Sbjct: 369 -----LGKDPAASSSSPRWRSSEFVMKPLSSLRYPIEPAPWKQTERNRFSQKQ------- 416
Query: 265 DIKASKSSLSVYGEIEKRVSELEFKRSGKDLRALKQILDAMQRYKDTSDIARDQALNSPS 324
A +S S+ +E ++ +LE K SGKDLRALK IL+AMQ K D + Q ++
Sbjct: 417 ---ACRSVKSLSQSMEGKLKDLEVKHSGKDLRALKDILEAMQS-KGLFDTRKQQQCSNLE 472
Query: 325 NNQN------NTSISENSNVRSPRIPQKDPASVTVEKSNSSKMPIVIMKPARVTRKA 375
++ TS ++ ++R+P IP ++ + PIVIMKPAR+ K+
Sbjct: 473 AQRDYELADSATSKHDSIDLRNPVIP------------SNMRGPIVIMKPARLVEKS 517