Miyakogusa Predicted Gene

Lj1g3v3025180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3025180.1 Non Chatacterized Hit- tr|J3LQP0|J3LQP0_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G3,32.12,1e-18,seg,NULL; Bromodomain transcription factors and
PHD do,Bromodomain transcription factor; Bromo_TP,Br,CUFF.29931.1
         (381 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34340.1 | Symbols: TAF8 | TBP-associated factor 8 | chr4:164...   207   1e-53
AT3G02160.1 | Symbols:  | Bromodomain transcription factor | chr...   190   1e-48
AT5G15570.1 | Symbols:  | Bromodomain transcription factor | chr...   179   2e-45
AT1G31240.1 | Symbols:  | Bromodomain transcription factor | chr...    76   5e-14

>AT4G34340.1 | Symbols: TAF8 | TBP-associated factor 8 |
           chr4:16426771-16427832 REVERSE LENGTH=353
          Length = 353

 Score =  207 bits (527), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/344 (38%), Positives = 190/344 (55%), Gaps = 34/344 (9%)

Query: 43  CESEGFPAFQQSALDALSDITARFILNVGKSAHSFANLAGRSECNVFDVIQGLEDMGSAH 102
           CES G+  F+  AL++LS    ++IL +GK+A SFANL GRS+CNVFD+I  L+D+   +
Sbjct: 39  CESVGYENFKDPALESLSGFALQYILQLGKTATSFANLTGRSQCNVFDIILALDDLTDNN 98

Query: 103 GFGGASDVDHCLESSGVVREIYQFVNEGEPITFAHPIPRFPVV---KERVLPPSFLLKGE 159
           G  G S     L  S  +REI  FVN  E + F+ P+P FPV    + R + PSF+  GE
Sbjct: 99  GEQGISSESCSLGRSIKLREIIDFVNSSEEVPFSQPLPSFPVAISDRSRKMIPSFVEIGE 158

Query: 160 EPPGEHIPAWLPAFPVPQTYSESPLGNGRGTEPCASKFDQERENGNGERPL--LQQQMVS 217
            PPG+HIP WLPAFP P TY E+P+   R ++P   K +Q R+    ER L  LQ+++V 
Sbjct: 159 TPPGKHIPLWLPAFPDPHTYKETPMWIERVSDPRGDKIEQARQRRKAERALLSLQRKLVC 218

Query: 218 NMFEKSTVTDPADAKAKRVATESNPFFAAPLKFEEKEVASVAPPTKLFNGVVASDNPVVE 277
            +  ++ V    D                 ++ +E E+ SV+   K            VE
Sbjct: 219 KISSRNPVWGDMDG------------VKEEMRDDESELRSVSSGEK------------VE 254

Query: 278 NFVKNDSVSVLETFAPAIEAMKSTCCDSKEDQTHFPVNEKPTVRFKVGIKNKFLGRSVGL 337
           + +  D +SV+E FAPA+EA +     S E  T +  N KP    K+  + KFLG+ + L
Sbjct: 255 S-LNRDGLSVIEAFAPAMEAARDGF--SSEAHTEWKKN-KPVALSKLRTEKKFLGQPLDL 310

Query: 338 IPQKEEHKKTLPWFAMEDEKDDRKRRAEKILRESLENPDQLVQL 381
             Q +   + +  F  E+++DD++RRAE ILR+ +ENP  L QL
Sbjct: 311 SLQMKGEDRPIS-FVREEDRDDKRRRAEFILRQCMENPVDLNQL 353


>AT3G02160.1 | Symbols:  | Bromodomain transcription factor |
           chr3:394615-395808 FORWARD LENGTH=397
          Length = 397

 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 193/386 (50%), Gaps = 39/386 (10%)

Query: 1   MSNGGGKTGRQLEQPAATWRRRTVGGGDDFXXXXXXXXXXXXCES------------EG- 47
           M+NG G+ G Q  +      +R +  G+DF            CES            EG 
Sbjct: 17  MNNGVGEGGSQQRELHG---KRKLFRGNDFAFSIARMAVAQICESVEVNPYQESQTREGV 73

Query: 48  -FPAFQQSALDALSDITARFILNVGKSAHSFANLAGRSECNVFDVIQGLEDMGSAHGFGG 106
            F +FQ+SALD L+D+  ++I ++GK+AH +ANLAGR + N  D++Q LED+GS  GF G
Sbjct: 74  RFSSFQESALDTLTDVAVQYIQSIGKTAHLYANLAGRVDGNSLDILQALEDLGSGLGFAG 133

Query: 107 ASDVDHCLESSGVVREIYQFVNEGEPITFAHPIPRFPVVKERVLPPSFLLKGEEPPGEHI 166
            SD DHCL  SGVV++I ++  E E I F + +PRFP  KE+   PSF   G EPP EHI
Sbjct: 134 VSDTDHCLADSGVVKDIIRYTGEAEEIPFVYSLPRFPFSKEKKPAPSFSEVGAEPPDEHI 193

Query: 167 PAWLPAFPVPQTYSESPLGNGRGTEPCASKFDQE---RENGNGERPLLQQQMVSNMFEKS 223
           P WLPAFP      E+ L + R  E  A+  + E   +ENG+   P +Q         + 
Sbjct: 194 PVWLPAFP------ETELCD-RSEETNAATIEGEIPSKENGSS-LPSMQLSFDGGGRLEI 245

Query: 224 TVTDPADAKAKRVATESNPFFAAPLKFEEKEVASVAPPTKLFNGVVASDNPVVENFVKND 283
             +     ++     E N F  APL+F EK V+ V  P +L N VV +++   ++   N 
Sbjct: 246 HKSSKDVGESTEAVVEGNLFLTAPLRFVEKNVSPVVRPLELSNEVVRTNHVPDKHVRNNH 305

Query: 284 SVSVLETFAPAIEAMKSTCCDSKEDQTHFPVNEK--PTVRFKVGIKNKFLGRSVGLIPQK 341
            + +LE  AP+ +          +D     V  K    VRFK+G       RS+ L   +
Sbjct: 306 HIPILEASAPSDKINNKNWLAISKDVEKVDVARKELTLVRFKIGTTK----RSMCLAKNR 361

Query: 342 EEHKKTLPWFAMEDEKDDRKRRAEKI 367
              ++   WF    E +D++ +  +I
Sbjct: 362 SFQEEG--WF---QEGEDKREKTSEI 382


>AT5G15570.1 | Symbols:  | Bromodomain transcription factor |
           chr5:5066851-5067996 FORWARD LENGTH=381
          Length = 381

 Score =  179 bits (455), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/392 (32%), Positives = 192/392 (48%), Gaps = 44/392 (11%)

Query: 1   MSNGGGKTGRQLEQPAATWRRRTVGGGDDFXXXXXXXXXXXXCES-------------EG 47
           M NGGG+ G Q  +      +R++  G+DF            CES             EG
Sbjct: 1   MINGGGEGGSQRRELQG---KRSMSRGNDFAYALARMATAQICESVEINSYQESSQSREG 57

Query: 48  --FPAFQQSALDALSDITARFILNVGKSAHSFANLAGRSECNVFDVIQGLEDMGSAHGFG 105
             F +FQ++AL+ L+D+  ++I N+GK+A  + N+AGR E N  D++Q LED+GS  GF 
Sbjct: 58  LRFSSFQETALETLTDVVIQYIQNIGKTAQFYVNMAGRVESNALDIVQALEDLGSGLGFD 117

Query: 106 GASDVDHCLESSGVVREIYQFVNEGEPITFAHPIPRFPVVKERVLPPSFLLKGEEPPGEH 165
           GA DV+HCL  SGVV++I ++  E E I F + +PRFP  + +   PSF   G EPP EH
Sbjct: 118 GAHDVEHCLADSGVVKDIIRYTGEAEEIPFVYSLPRFPFNRGKRPAPSFSDIGVEPPDEH 177

Query: 166 IPAWLPAFPVPQTYSESPLGNGRGTEPCASKFD---QERENGNGERPLLQQQMVSNMFEK 222
           IP WLPAFP      E+ + NG   E    K +   Q R+NG+     +QQ +  +  + 
Sbjct: 178 IPVWLPAFP------ETKMSNG-SEEINVDKIERDVQSRDNGSSLMS-VQQSVDVDRLKV 229

Query: 223 STVTDPADAKAKRVATESNPFFAAPLKFEEKEV--ASVAPPTKLFNGVVASDNPVVENFV 280
               D  D +      E NPF AAP+   EK V  + V  P++L    +++++   ++  
Sbjct: 230 QKSMDQKDVQKPIEEPEGNPFLAAPIWVGEKNVSLSRVVCPSELRKEEISTNHLPEKHMS 289

Query: 281 KNDSVSVLETFAPAIEAMKSTCCDSKEDQTHF--PVNEKPTVRFKVGIKNKFLGRSVGLI 338
            +  +  LE +A + +          ED+        +   +RFK+G +          I
Sbjct: 290 MSHHIPALEAYALSDKINDKNRLAGMEDEQKRDGARTQGALLRFKIGTRK---ASECWKI 346

Query: 339 PQKEEHKKTLPWFAMEDEKDDRKRRAEKILRE 370
            Q  E K    WF     K+D  +R +K+ RE
Sbjct: 347 NQCLEEK---GWF-----KEDGNKREKKVERE 370


>AT1G31240.1 | Symbols:  | Bromodomain transcription factor |
           chr1:11164065-11164898 REVERSE LENGTH=277
          Length = 277

 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 75/144 (52%), Gaps = 18/144 (12%)

Query: 43  CESEGFPAFQQSALDALSDITARFILNVGKSAHSFANLAGRSECNVFDVIQGLED--MGS 100
           C+S G+ A   SAL+ L+  T +F+ ++ + A SF+N A R+E N+FD++ GL+D  + +
Sbjct: 39  CQSIGYKATDASALNTLTLTTTKFLQSLAELASSFSNTANRTEVNLFDIVNGLQDIALST 98

Query: 101 AHGFGGASDV----DHCLESSGVVREIYQFVNEGEPITFAHPIPRFPVVKERVLPPSF-- 154
           +  F G S V      CL  S V+R +  FV     I FA P+PR    +ER    SF  
Sbjct: 99  SDCFPGGSTVHDIESQCLIKSAVLRNLSDFVTYAPEIPFAKPLPR----RER--DGSFGG 152

Query: 155 ----LLKGEEPPGEHIPAWLPAFP 174
               +          +PAWLP FP
Sbjct: 153 DLDHVAVTRSVDVTSVPAWLPPFP 176