Miyakogusa Predicted Gene

Lj1g3v3023740.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3023740.1 Non Chatacterized Hit- tr|K4B5B3|K4B5B3_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,59.21,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
coiled-coil,NULL; seg,NULL; DUF1675,Protein of unkn,CUFF.29903.1
         (404 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29575.4 | Symbols: AFP3 | ABI five binding protein 3 | chr3:...   129   3e-30
AT3G29575.3 | Symbols: AFP3 | ABI five binding protein 3 | chr3:...   129   3e-30
AT3G29575.1 | Symbols: AFP3 | ABI five binding protein 3 | chr3:...   129   3e-30
AT1G13740.1 | Symbols: AFP2 | ABI five binding protein 2 | chr1:...   110   2e-24
AT1G69260.1 | Symbols: AFP1 | ABI five binding protein | chr1:26...   105   7e-23
AT3G02140.1 | Symbols: TMAC2, AFP4 | AFP2 (ABI five-binding prot...    98   1e-20
AT3G07250.1 | Symbols:  | nuclear transport factor 2 (NTF2) fami...    92   6e-19
AT4G28910.3 | Symbols: NINJA | novel interactor of JAZ | chr4:14...    64   1e-10
AT4G28910.1 | Symbols: NINJA | novel interactor of JAZ | chr4:14...    64   1e-10
AT4G28910.2 | Symbols: NINJA | novel interactor of JAZ | chr4:14...    64   1e-10

>AT3G29575.4 | Symbols: AFP3 | ABI five binding protein 3 |
           chr3:11382416-11383657 REVERSE LENGTH=231
          Length = 231

 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 70/83 (84%), Gaps = 1/83 (1%)

Query: 323 QNRNKDTVKNMLEDMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFV 382
           +N  K+  +N++EDMP VST G  PNGKKI GFLYRY KGEEV+I+CVCHG F++PAEFV
Sbjct: 149 ENLGKEASQNIIEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFV 208

Query: 383 KHAGGEDVANPLKHIVVSPS-FL 404
           KHAGG DVA+PLKHIVV+PS FL
Sbjct: 209 KHAGGGDVAHPLKHIVVNPSPFL 231



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 32/103 (31%)

Query: 80  MNGRFGVDPNAAKKIKRTTSKPEFVNQARNEEMXXXXXXXXXXXXXXXXXXXXXXXXXXX 139
           +NGRFGVDP A  ++ R+TS  + V   R+                              
Sbjct: 24  LNGRFGVDPLAKTRLMRSTSVLDLVVNDRS------------------------------ 53

Query: 140 XXHLIRTCSLPXXXXXXXXXXXXLQTLRRMEARRKRSEKQQRN 182
              L RTCSLP            LQ+LRR+EA+RKRSEKQ+++
Sbjct: 54  --GLSRTCSLPVETEEEWRKRKELQSLRRLEAKRKRSEKQRKH 94


>AT3G29575.3 | Symbols: AFP3 | ABI five binding protein 3 |
           chr3:11382416-11383657 REVERSE LENGTH=231
          Length = 231

 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 70/83 (84%), Gaps = 1/83 (1%)

Query: 323 QNRNKDTVKNMLEDMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFV 382
           +N  K+  +N++EDMP VST G  PNGKKI GFLYRY KGEEV+I+CVCHG F++PAEFV
Sbjct: 149 ENLGKEASQNIIEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFV 208

Query: 383 KHAGGEDVANPLKHIVVSPS-FL 404
           KHAGG DVA+PLKHIVV+PS FL
Sbjct: 209 KHAGGGDVAHPLKHIVVNPSPFL 231



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 32/103 (31%)

Query: 80  MNGRFGVDPNAAKKIKRTTSKPEFVNQARNEEMXXXXXXXXXXXXXXXXXXXXXXXXXXX 139
           +NGRFGVDP A  ++ R+TS  + V   R+                              
Sbjct: 24  LNGRFGVDPLAKTRLMRSTSVLDLVVNDRS------------------------------ 53

Query: 140 XXHLIRTCSLPXXXXXXXXXXXXLQTLRRMEARRKRSEKQQRN 182
              L RTCSLP            LQ+LRR+EA+RKRSEKQ+++
Sbjct: 54  --GLSRTCSLPVETEEEWRKRKELQSLRRLEAKRKRSEKQRKH 94


>AT3G29575.1 | Symbols: AFP3 | ABI five binding protein 3 |
           chr3:11382416-11383657 REVERSE LENGTH=231
          Length = 231

 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 70/83 (84%), Gaps = 1/83 (1%)

Query: 323 QNRNKDTVKNMLEDMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFV 382
           +N  K+  +N++EDMP VST G  PNGKKI GFLYRY KGEEV+I+CVCHG F++PAEFV
Sbjct: 149 ENLGKEASQNIIEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFV 208

Query: 383 KHAGGEDVANPLKHIVVSPS-FL 404
           KHAGG DVA+PLKHIVV+PS FL
Sbjct: 209 KHAGGGDVAHPLKHIVVNPSPFL 231



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 32/103 (31%)

Query: 80  MNGRFGVDPNAAKKIKRTTSKPEFVNQARNEEMXXXXXXXXXXXXXXXXXXXXXXXXXXX 139
           +NGRFGVDP A  ++ R+TS  + V   R+                              
Sbjct: 24  LNGRFGVDPLAKTRLMRSTSVLDLVVNDRS------------------------------ 53

Query: 140 XXHLIRTCSLPXXXXXXXXXXXXLQTLRRMEARRKRSEKQQRN 182
              L RTCSLP            LQ+LRR+EA+RKRSEKQ+++
Sbjct: 54  --GLSRTCSLPVETEEEWRKRKELQSLRRLEAKRKRSEKQRKH 94


>AT1G13740.1 | Symbols: AFP2 | ABI five binding protein 2 |
           chr1:4713969-4715158 FORWARD LENGTH=348
          Length = 348

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 56/69 (81%)

Query: 334 LEDMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFVKHAGGEDVANP 393
           L DMP V TKG  PNG++++G LY+Y KGEEV+I+C+CHG F+TPAEFVKH GG DV  P
Sbjct: 276 LVDMPCVFTKGDGPNGRRVDGILYKYGKGEEVRIMCICHGSFLTPAEFVKHGGGGDVDRP 335

Query: 394 LKHIVVSPS 402
           L+HIVV+ S
Sbjct: 336 LRHIVVNTS 344


>AT1G69260.1 | Symbols: AFP1 | ABI five binding protein |
           chr1:26039314-26040570 FORWARD LENGTH=345
          Length = 345

 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 57/72 (79%), Gaps = 3/72 (4%)

Query: 336 DMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFVKHAGGEDVANPLK 395
           +MP V TKG  PNGK+++G LYRY  GEEV+I+CVCHG F++PA+FVKHAGG  V +PL+
Sbjct: 273 EMPCVFTKGDGPNGKRVDGILYRYGSGEEVRIMCVCHGDFLSPADFVKHAGGPHVDHPLR 332

Query: 396 HIVV---SPSFL 404
           HIVV   SPS L
Sbjct: 333 HIVVNTSSPSNL 344


>AT3G02140.1 | Symbols: TMAC2, AFP4 | AFP2 (ABI five-binding protein
           2) family protein | chr3:385478-386437 REVERSE
           LENGTH=319
          Length = 319

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 61/87 (70%), Gaps = 9/87 (10%)

Query: 322 LQNRNKDTVKNMLEDMPSVSTKGVSPNGKKIEGFLYRYS-KGEEVKILCVCHGLFMTPAE 380
           ++N   +  +N+LEDMP VST+ V  +GK++EGFLY Y    EEVKI+CVCHG F++PAE
Sbjct: 226 VENSGMEKARNILEDMPCVSTRDVGADGKRVEGFLYWYGGNKEEVKIVCVCHGSFLSPAE 285

Query: 381 FVKHA--------GGEDVANPLKHIVV 399
           FV+H         GG+ + NPL+HIVV
Sbjct: 286 FVRHGGGTVSDDDGGDVMINPLRHIVV 312


>AT3G07250.1 | Symbols:  | nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           | chr3:2300579-2308305 REVERSE LENGTH=1294
          Length = 1294

 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 5/124 (4%)

Query: 282 DNMLQNGELKSPATSGARVAENSGKIAAVTMRTQANGHPPLQNRNKDTVKNML--EDMPS 339
           +N+L   E     T G++ AE   +  + +  T+ +G PP  + N +   ++L    MP 
Sbjct: 165 NNILTGTEQTVHNTDGSKDAET--QEWSNSSVTKESGKPPKPHTNSNGNGSLLPFAQMPC 222

Query: 340 VSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFVKHAGGEDVANPLKHIVV 399
           V++ G  P GK + GFLYRYSK E + I+CVCHG   +PAEF+ HAGG +V++PL+HI V
Sbjct: 223 VTSTGNGPEGKTVNGFLYRYSKSE-ISIICVCHGTSFSPAEFIVHAGGTNVSHPLRHITV 281

Query: 400 SPSF 403
              F
Sbjct: 282 GDEF 285


>AT4G28910.3 | Symbols: NINJA | novel interactor of JAZ |
           chr4:14264330-14265680 REVERSE LENGTH=425
          Length = 425

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 336 DMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFVKHAGGEDVA 391
           ++P VST G  P+G+ I G  YRY+   ++KI+C CHG  M+P EFV+HA  E V+
Sbjct: 357 NLPWVSTTGSGPHGRTISGVTYRYN-ANQIKIVCACHGSHMSPEEFVRHASEEYVS 411


>AT4G28910.1 | Symbols: NINJA | novel interactor of JAZ |
           chr4:14264330-14265680 REVERSE LENGTH=425
          Length = 425

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 336 DMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFVKHAGGEDVA 391
           ++P VST G  P+G+ I G  YRY+   ++KI+C CHG  M+P EFV+HA  E V+
Sbjct: 357 NLPWVSTTGSGPHGRTISGVTYRYN-ANQIKIVCACHGSHMSPEEFVRHASEEYVS 411


>AT4G28910.2 | Symbols: NINJA | novel interactor of JAZ |
           chr4:14264330-14265680 REVERSE LENGTH=425
          Length = 425

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 336 DMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFVKHAGGEDVA 391
           ++P VST G  P+G+ I G  YRY+   ++KI+C CHG  M+P EFV+HA  E V+
Sbjct: 357 NLPWVSTTGSGPHGRTISGVTYRYN-ANQIKIVCACHGSHMSPEEFVRHASEEYVS 411