Miyakogusa Predicted Gene

Lj1g3v3022270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3022270.1 Non Chatacterized Hit- tr|K3XYP6|K3XYP6_SETIT
Uncharacterized protein OS=Setaria italica GN=Si007054,70.77,4e-19,
,CUFF.29886.1
         (65 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55950.1 | Symbols:  | Nucleotide/sugar transporter family pr...   100   3e-22
AT5G57100.1 | Symbols:  | Nucleotide/sugar transporter family pr...    74   3e-14

>AT5G55950.1 | Symbols:  | Nucleotide/sugar transporter family
          protein | chr5:22658411-22660253 REVERSE LENGTH=398
          Length = 398

 Score =  100 bits (248), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/65 (70%), Positives = 54/65 (83%), Gaps = 1/65 (1%)

Query: 1  MGWLDSLFG-EGRKVIKRKDSDAGEAGRALEEIRGSLHNELRTSEGAKRQQQRYCGPTVA 59
          MG +DSL G + RK +KRKDSDA EAGRALEE+R SL+NEL+TSEGAKRQQQR+CGP VA
Sbjct: 1  MGLVDSLLGKDARKFLKRKDSDAAEAGRALEELRSSLYNELKTSEGAKRQQQRFCGPVVA 60

Query: 60 LILGF 64
          +   F
Sbjct: 61 MSFNF 65


>AT5G57100.1 | Symbols:  | Nucleotide/sugar transporter family
          protein | chr5:23106563-23108440 REVERSE LENGTH=390
          Length = 390

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 41/56 (73%), Gaps = 3/56 (5%)

Query: 12 RKVIKRKDSDAGEAGRALEEIRGSLHNELRTSEGAKRQQQ---RYCGPTVALILGF 64
          +K++KRKDSDAGE G+ALE++R SL N  R+ E  KRQQQ   R CGPTVAL   F
Sbjct: 17 KKILKRKDSDAGERGKALEDLRASLFNRFRSPETPKRQQQQQHRICGPTVALTFNF 72