Miyakogusa Predicted Gene

Lj1g3v3006720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3006720.1 Non Chatacterized Hit- tr|K4B739|K4B739_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,47.73,3e-18,U1-like zinc finger,Zinc finger, U1-type; zinc
finger,Zinc finger, C2H2-like; ZINC FINGER PROTEIN-RE,CUFF.29853.1
         (332 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61190.1 | Symbols:  | putative endonuclease or glycosyl hydr...    66   3e-11

>AT5G61190.1 | Symbols:  | putative endonuclease or glycosyl
           hydrolase with C2H2-type zinc finger domain |
           chr5:24615480-24619886 FORWARD LENGTH=995
          Length = 995

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 24/120 (20%)

Query: 194 VQPAYCEVCKTECTSKDVLDQHKLGKRHKKNLEKLRESLKPAQVHPSGSSNPVIGPREQN 253
           V+P  C+VC+   T+ D    H  GK+H+ NLE          +    S N ++GP E +
Sbjct: 294 VEPLLCKVCQISFTNNDTYKNHTYGKKHRNNLE----------LQSGKSKNILVGPAEPS 343

Query: 254 DXXXXXXXXXXXXXIETPEDLEIKKKKVLEGGAAANAVRTCAVCNVVCNSETVYNYHIAG 313
                          E  E   + KK ++E  A ANA   C +CNVVC S+ V+N H+ G
Sbjct: 344 K--------------EVLEKHNMNKKVMIESRAQANAEFVCLMCNVVCQSQIVFNSHLRG 389