Miyakogusa Predicted Gene

Lj1g3v3006690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3006690.1 Non Chatacterized Hit- tr|K4BL51|K4BL51_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,64.44,0.00000001,Complex1_LYR_1,Complex 1 LYR
protein,CUFF.29850.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61220.1 | Symbols:  | LYR family of Fe/S cluster biogenesis ...    59   6e-10

>AT5G61220.1 | Symbols:  | LYR family of Fe/S cluster biogenesis
          protein | chr5:24626057-24626320 REVERSE LENGTH=87
          Length = 87

 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 37/46 (80%), Gaps = 1/46 (2%)

Query: 4  VSAAEVRTLLRSLLRVARQFPDYNIREYTKRRVVDAFRECSESLND 49
          VS++EV +L R+LLR  RQFPDYNIREY+KRR +D FR  +++L D
Sbjct: 2  VSSSEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFR-MNKNLTD 46