Miyakogusa Predicted Gene

Lj1g3v2996620.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2996620.3 Non Chatacterized Hit- tr|D8T4T9|D8T4T9_SELML
Putative uncharacterized protein OS=Selaginella moelle,57.14,5e-17,no
description,Zinc finger, RING/FYVE/PHD-type; ZF_RING_1,Zinc finger,
RING-type, conserved site; ZF,CUFF.29844.3
         (122 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29270.2 | Symbols:  | RING/U-box superfamily protein | chr3:...   201   1e-52
AT3G29270.1 | Symbols:  | RING/U-box superfamily protein | chr3:...   201   1e-52
AT1G69330.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   175   7e-45
AT1G74370.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   146   4e-36
AT1G21650.3 | Symbols: SECA2 | Preprotein translocase SecA famil...    54   2e-08
AT1G21651.1 | Symbols:  | zinc ion binding | chr1:7601061-760415...    49   6e-07

>AT3G29270.2 | Symbols:  | RING/U-box superfamily protein |
           chr3:11235326-11236117 FORWARD LENGTH=263
          Length = 263

 Score =  201 bits (510), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 89/123 (72%), Positives = 109/123 (88%), Gaps = 1/123 (0%)

Query: 1   MWNFASSCISGSVGLKNDCLKPTHSASECSDDE-TSMTTREEGLECPICWESFNIVENVP 59
           MWN ASS ++G++G KND  +P H+ +ECSDD+ +S+ +++EGLECPICWESFNIVENVP
Sbjct: 9   MWNLASSYLTGNIGPKNDIRRPVHAHAECSDDDVSSVGSKDEGLECPICWESFNIVENVP 68

Query: 60  YVLWCGHTLCKNCILGLQWAMVKFPTLPIQLPLFISCPWCNILSFRLVHQGNLKFPRKNY 119
           YVLWCGHT+CKNCILGLQWA+VK PT P+QLPLFISCPWCN+LSFRLV +G L+FP KNY
Sbjct: 69  YVLWCGHTMCKNCILGLQWAIVKLPTHPVQLPLFISCPWCNLLSFRLVFRGTLRFPHKNY 128

Query: 120 FLL 122
           F+L
Sbjct: 129 FVL 131


>AT3G29270.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:11235326-11236117 FORWARD LENGTH=263
          Length = 263

 Score =  201 bits (510), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 89/123 (72%), Positives = 109/123 (88%), Gaps = 1/123 (0%)

Query: 1   MWNFASSCISGSVGLKNDCLKPTHSASECSDDE-TSMTTREEGLECPICWESFNIVENVP 59
           MWN ASS ++G++G KND  +P H+ +ECSDD+ +S+ +++EGLECPICWESFNIVENVP
Sbjct: 9   MWNLASSYLTGNIGPKNDIRRPVHAHAECSDDDVSSVGSKDEGLECPICWESFNIVENVP 68

Query: 60  YVLWCGHTLCKNCILGLQWAMVKFPTLPIQLPLFISCPWCNILSFRLVHQGNLKFPRKNY 119
           YVLWCGHT+CKNCILGLQWA+VK PT P+QLPLFISCPWCN+LSFRLV +G L+FP KNY
Sbjct: 69  YVLWCGHTMCKNCILGLQWAIVKLPTHPVQLPLFISCPWCNLLSFRLVFRGTLRFPHKNY 128

Query: 120 FLL 122
           F+L
Sbjct: 129 FVL 131


>AT1G69330.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:26064138-26064950 REVERSE LENGTH=270
          Length = 270

 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 100/123 (81%), Gaps = 2/123 (1%)

Query: 1   MWNFASSCISGSVGLKNDCLKPTHSASECSDDETSMTTR-EEGLECPICWESFNIVENVP 59
           MW FAS+ I GS+GLK        ++S+CSDDE S  +R EEGLECPICWESFNIVENVP
Sbjct: 1   MWGFASNVI-GSMGLKKSPKDSAQASSQCSDDEVSNISRDEEGLECPICWESFNIVENVP 59

Query: 60  YVLWCGHTLCKNCILGLQWAMVKFPTLPIQLPLFISCPWCNILSFRLVHQGNLKFPRKNY 119
           YVLWCGHTLC+NC+ GLQ A+++  +  I++P F+SCPWC +LSFR+V++GNLKFPRKN+
Sbjct: 60  YVLWCGHTLCQNCVFGLQSAVLRLSSQDIRIPFFVSCPWCQLLSFRIVYKGNLKFPRKNF 119

Query: 120 FLL 122
           FLL
Sbjct: 120 FLL 122


>AT1G74370.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:27958200-27958985 REVERSE LENGTH=261
          Length = 261

 Score =  146 bits (368), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 87/125 (69%), Gaps = 4/125 (3%)

Query: 1   MWNFASSCISGSVGLKND--CLKPTHSASECSDDETSMTTREEGLECPICWESFNIVENV 58
           MWN AS  I      K +    KP  +  + S D    TT+EE LECPICWESFN+VENV
Sbjct: 1   MWNLASKSIREGFISKGEEAATKPRRATLDRSGDGRK-TTKEEKLECPICWESFNVVENV 59

Query: 59  PYVLWCGHTLCKNCILGLQWAMV-KFPTLPIQLPLFISCPWCNILSFRLVHQGNLKFPRK 117
           PYVLWCGHT+CK C+LGLQ A+V K   LP QLP F++CPWCNILS RLV  G ++FP K
Sbjct: 60  PYVLWCGHTICKYCLLGLQRAIVIKSSALPFQLPFFVACPWCNILSLRLVCNGTIRFPSK 119

Query: 118 NYFLL 122
           N++LL
Sbjct: 120 NFYLL 124


>AT1G21650.3 | Symbols: SECA2 | Preprotein translocase SecA family
           protein | chr1:7592891-7604152 REVERSE LENGTH=1805
          Length = 1805

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 11/73 (15%)

Query: 44  ECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAMVKFPTLPIQLPLFISCPWCNILS 103
           ECP+C +S++    VP VL CGHT C+ C+            LP + P  I CP C +L 
Sbjct: 5   ECPVCLQSYDGESTVPRVLACGHTACEECL----------TNLPKKFPDTIRCPACTVL- 53

Query: 104 FRLVHQGNLKFPR 116
            +   QG    P+
Sbjct: 54  VKFPPQGPSALPK 66


>AT1G21651.1 | Symbols:  | zinc ion binding | chr1:7601061-7604152
           REVERSE LENGTH=811
          Length = 811

 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 12/79 (15%)

Query: 44  ECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAMVKFPTLPIQLPLFISCPWCNILS 103
           ECP+C +S++    VP VL CGHT C+ C+            LP + P  I CP C +L 
Sbjct: 5   ECPVCLQSYDGESTVPRVLACGHTACEECL----------TNLPKKFPDTIRCPACTVL- 53

Query: 104 FRLVHQGNLKFPRKNYFLL 122
            +   QG    P KN  LL
Sbjct: 54  VKFPPQGPSALP-KNIDLL 71