Miyakogusa Predicted Gene

Lj1g3v2983450.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2983450.1 tr|F2DTA3|F2DTA3_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,41.1,2e-18,seg,NULL;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; DUF179,Protein of
unknown function DUF179,NODE_6563_length_695_cov_314.516541.path2.1
         (233 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29240.2 | Symbols:  | Protein of unknown function (DUF179) |...   201   3e-52
AT3G29240.1 | Symbols:  | Protein of unknown function (DUF179) |...   201   3e-52
AT1G33780.1 | Symbols:  | Protein of unknown function (DUF179) |...    84   9e-17

>AT3G29240.2 | Symbols:  | Protein of unknown function (DUF179) |
           chr3:11191780-11192868 FORWARD LENGTH=317
          Length = 317

 Score =  201 bits (511), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/249 (50%), Positives = 146/249 (58%), Gaps = 24/249 (9%)

Query: 1   MEACFLTHSSFIKTPDQLIPSIRAGSLAYSKSKRPSQQFQSRKVGIPFTVSCCQFSSSSG 60
           M+ACFLT  S I    +L+P I+A    ++  KR S QF +RKV  P +V+C    S   
Sbjct: 1   MDACFLTSRS-ISGVKELVPFIKA--RIFTCPKRNSGQFVTRKVASPISVNCSLSDSWKP 57

Query: 61  -ED-----KPIVN-----ADWRSFRAKLVAGEQIL-----KPEXXXXXXXXXXXXXXSPL 104
            ED     K  VN     ADWR FRA+LVAGEQ       +P               S L
Sbjct: 58  LEDDADLFKDCVNNSTSDADWREFRARLVAGEQAATSEKDQPSWSNPDMVVDYQPSSSSL 117

Query: 105 ITIGDKWAHIIHEPERGCLLIATEKLDGVHIFERTVILLLATGPIGPSGIILNRPSLMSI 164
           ITIG KWAH IHEPE GCLLIATEKLDGVHIFE+TVILLL+ GP GP G+ILNRPSLMSI
Sbjct: 118 ITIGSKWAHKIHEPETGCLLIATEKLDGVHIFEKTVILLLSVGPSGPIGVILNRPSLMSI 177

Query: 165 KETRSTAFDVEDTFSNSXXXXXXXXXXXXXXXSPKXXXXXXXXXXAVGKSGVFEEVMKGL 224
           KET+ST  D+  TFS+                SP+           VGKSGVF +VMKGL
Sbjct: 178 KETKSTILDMAGTFSDKRLFFGGPLEEGLFLVSPR-----SGGDNEVGKSGVFRQVMKGL 232

Query: 225 YYGAKESVG 233
           YYG +ESVG
Sbjct: 233 YYGTRESVG 241


>AT3G29240.1 | Symbols:  | Protein of unknown function (DUF179) |
           chr3:11191780-11192868 FORWARD LENGTH=317
          Length = 317

 Score =  201 bits (511), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/249 (50%), Positives = 146/249 (58%), Gaps = 24/249 (9%)

Query: 1   MEACFLTHSSFIKTPDQLIPSIRAGSLAYSKSKRPSQQFQSRKVGIPFTVSCCQFSSSSG 60
           M+ACFLT  S I    +L+P I+A    ++  KR S QF +RKV  P +V+C    S   
Sbjct: 1   MDACFLTSRS-ISGVKELVPFIKA--RIFTCPKRNSGQFVTRKVASPISVNCSLSDSWKP 57

Query: 61  -ED-----KPIVN-----ADWRSFRAKLVAGEQIL-----KPEXXXXXXXXXXXXXXSPL 104
            ED     K  VN     ADWR FRA+LVAGEQ       +P               S L
Sbjct: 58  LEDDADLFKDCVNNSTSDADWREFRARLVAGEQAATSEKDQPSWSNPDMVVDYQPSSSSL 117

Query: 105 ITIGDKWAHIIHEPERGCLLIATEKLDGVHIFERTVILLLATGPIGPSGIILNRPSLMSI 164
           ITIG KWAH IHEPE GCLLIATEKLDGVHIFE+TVILLL+ GP GP G+ILNRPSLMSI
Sbjct: 118 ITIGSKWAHKIHEPETGCLLIATEKLDGVHIFEKTVILLLSVGPSGPIGVILNRPSLMSI 177

Query: 165 KETRSTAFDVEDTFSNSXXXXXXXXXXXXXXXSPKXXXXXXXXXXAVGKSGVFEEVMKGL 224
           KET+ST  D+  TFS+                SP+           VGKSGVF +VMKGL
Sbjct: 178 KETKSTILDMAGTFSDKRLFFGGPLEEGLFLVSPR-----SGGDNEVGKSGVFRQVMKGL 232

Query: 225 YYGAKESVG 233
           YYG +ESVG
Sbjct: 233 YYGTRESVG 241


>AT1G33780.1 | Symbols:  | Protein of unknown function (DUF179) |
           chr1:12244799-12246034 REVERSE LENGTH=325
          Length = 325

 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 77/171 (45%), Gaps = 25/171 (14%)

Query: 66  VNADWRSFRAKLVAGEQILKPEXXXXXXXXXXXXXXSPLITIGDKWAHIIHEPERGCLLI 125
           +N DWR FRA L   EQ  K E                   IG KWAH I  PE GC+L+
Sbjct: 95  LNTDWREFRANLFMKEQEEKAEAEGHESE-----------PIGLKWAHPIPFPETGCVLV 143

Query: 126 ATEKLDGVHIFERTVILLLATGPI----GPSGIILNRPSLMSIKETRSTAFDVEDTFSNS 181
           ATEKLDG   F RTV+LLL  G      GP G+++NRP   +IK  +ST  ++  TFS  
Sbjct: 144 ATEKLDGYRTFARTVVLLLRAGTRHPQEGPFGVVINRPLHKNIKHMKSTKTELATTFSEC 203

Query: 182 XXXXXXXXXXXXXXXSPKXXXXXXXXXXAVGKSGVFEEVMKGLYYGAKESV 232
                           P              K   FEEVM GL +G + S+
Sbjct: 204 ----------SLYFGGPLEASMFLLKTGDKTKIPGFEEVMPGLNFGTRNSL 244