Miyakogusa Predicted Gene

Lj1g3v2982420.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2982420.1 Non Chatacterized Hit- tr|C5Z6W3|C5Z6W3_SORBI
Putative uncharacterized protein Sb10g007530
OS=Sorghu,24.94,6e-18,seg,NULL; RNI-like,NULL; F-box domain,F-box
domain, cyclin-like; no description,NULL,CUFF.29809.1
         (497 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52680.2 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    62   1e-09
AT3G52680.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    62   1e-09
AT3G29830.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    51   2e-06
AT4G13960.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    50   3e-06
AT3G26922.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    50   4e-06

>AT3G52680.2 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr3:19527075-19528838
           FORWARD LENGTH=456
          Length = 456

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 36/181 (19%)

Query: 25  RDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFDVHNVFGSEEELLD 84
           +D ISELPD +L  I S +    ++ T  LSK+W +LW L  +L FD  +          
Sbjct: 20  KDRISELPDGLLLKILSSLPTNIVVATSVLSKQWRSLWKLVPNLEFDSDD---------- 69

Query: 85  KGYLAIEKVYEYSRKDISDVCKDEFIKRVNQFVKNFKGIMIDSFMVKFNNLNHRHSKNID 144
                    YE      S++    F+        + K  +++SF +KF N N     +I 
Sbjct: 70  ---------YESEHYTFSEIVCKSFL--------SHKAPVLESFRLKFVNFN---PVDIG 109

Query: 145 EWIKFAISRGVGRIDLLLYQEPGHY-KGTRYTFPFGLSFECKSSRLKHMHLVGCKLVCPP 203
            W+  A SR +  + L  Y  P    KG  +TFP  L   C  + L+ + LV C LV  P
Sbjct: 110 LWVGIAFSRHLRELVLDFY--PAELGKGVTFTFPSSL---CTCNTLETLKLVLCILVDIP 164

Query: 204 S 204
           S
Sbjct: 165 S 165


>AT3G52680.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr3:19527075-19528838
           FORWARD LENGTH=456
          Length = 456

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 36/181 (19%)

Query: 25  RDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFDVHNVFGSEEELLD 84
           +D ISELPD +L  I S +    ++ T  LSK+W +LW L  +L FD  +          
Sbjct: 20  KDRISELPDGLLLKILSSLPTNIVVATSVLSKQWRSLWKLVPNLEFDSDD---------- 69

Query: 85  KGYLAIEKVYEYSRKDISDVCKDEFIKRVNQFVKNFKGIMIDSFMVKFNNLNHRHSKNID 144
                    YE      S++    F+        + K  +++SF +KF N N     +I 
Sbjct: 70  ---------YESEHYTFSEIVCKSFL--------SHKAPVLESFRLKFVNFN---PVDIG 109

Query: 145 EWIKFAISRGVGRIDLLLYQEPGHY-KGTRYTFPFGLSFECKSSRLKHMHLVGCKLVCPP 203
            W+  A SR +  + L  Y  P    KG  +TFP  L   C  + L+ + LV C LV  P
Sbjct: 110 LWVGIAFSRHLRELVLDFY--PAELGKGVTFTFPSSL---CTCNTLETLKLVLCILVDIP 164

Query: 204 S 204
           S
Sbjct: 165 S 165


>AT3G29830.1 | Symbols:  | F-box/RNI-like superfamily protein |
           chr3:11737049-11738847 FORWARD LENGTH=464
          Length = 464

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 20/141 (14%)

Query: 20  DVKGKRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFDVHNVFGSE 79
           D   +RD IS LPD +L  I S +S KD + T  LSKRW       R++ ++  N+   E
Sbjct: 2   DSVNQRDRISSLPDVVLVMILSFLSFKDNVKTSILSKRW-------RNICYEAKNISFKE 54

Query: 80  EELLDKGYLAIEKVYEYSRKDISDVCKDEFIKRVNQFVKNFKGIMIDSFMVKFNNLNHRH 139
            E +D        V++Y  K +S      F++ +  +V      +I+SF +         
Sbjct: 55  SEYVDIS------VFDYVSKRVS------FVRYMLNWVSRVPIKVIESFEICL-GFPVGF 101

Query: 140 SKNIDEWIKFAISRGVGRIDL 160
              I   I+F+ISR V ++ L
Sbjct: 102 EVEIKSLIEFSISRQVKKLVL 122


>AT4G13960.1 | Symbols:  | F-box/RNI-like superfamily protein |
           chr4:8060681-8062231 REVERSE LENGTH=434
          Length = 434

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 19/137 (13%)

Query: 26  DYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFDVHNVFGSEEELLDK 85
           D++S LPD +L +I S ++ K+   T  LSKRW NL+    +L+ D  +VF   +E    
Sbjct: 2   DHVSSLPDEVLYHILSFLTTKEAALTSILSKRWRNLFTFVPNLDID-DSVFLHPQE---- 56

Query: 86  GYLAIEKVYEYSRKDISDVCKDEFIKRVNQFVKNFKGIMIDSFMVKFNNLNHRHSKNIDE 145
                E  YE  +  +      +F+ RV     N   I   S  ++    +HR    +D 
Sbjct: 57  ---GKEDRYEIQKSFM------KFVDRVLALQGN-SPIKKLSLKLRTGFDSHR----VDG 102

Query: 146 WIKFAISRGVGRIDLLL 162
           WI  A++RGV  +DLL+
Sbjct: 103 WISNALARGVTELDLLI 119


>AT3G26922.1 | Symbols:  | F-box/RNI-like superfamily protein |
           chr3:9922858-9923891 FORWARD LENGTH=306
          Length = 306

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 36/179 (20%)

Query: 26  DYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFDVHNVFGSEEELLDK 85
           D IS+LP+ +L  I SM+ +KD++ T  LSK W +LW L   L FD  N   ++ E  D+
Sbjct: 14  DRISDLPEALLLQILSMLPVKDVVTTSVLSKPWRSLWKLVPTLKFDYEN---NQSE--DE 68

Query: 86  GYLAIEKVYEYSRKDISDVCKDEFIKRVNQFVKNFKGIMIDSFMVKFNNLNHRHSKNIDE 145
            Y  I             VC+          + + K   ++S  + F       S  +  
Sbjct: 69  TYSEI-------------VCR---------LLLSNKAPFLESLHLGF-RFGECRSVEVGM 105

Query: 146 WIKFAISRGVGRIDLLLYQEPGHYKGTRYTFPFGLSFECKSSRLKHMHLVGCKLVCPPS 204
           WI  A +R V   DL+L+ E    KG+ + FP GL + C++  L+ + L    LV  PS
Sbjct: 106 WIGIAYARHVR--DLVLHVE--SVKGS-FIFPTGL-YNCET--LESLTLRSWVLVDVPS 156