Miyakogusa Predicted Gene

Lj1g3v2978140.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2978140.1 Non Chatacterized Hit- tr|A9PHB0|A9PHB0_POPTR
Putative uncharacterized protein OS=Populus
trichocarp,43.8,5e-19,STRUCTURAL CONSTITUENT OF RIBOSOME,NULL; 60S
RIBOSOMAL PROTEIN L34,Ribosomal protein L34Ae; seg,NULL,CUFF.34321.1
         (220 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15260.1 | Symbols:  | Ribosomal protein L34e superfamily pro...   167   6e-42
AT3G01170.1 | Symbols:  | Ribosomal protein L34e superfamily pro...   160   5e-40
AT5G19025.1 | Symbols:  | Ribosomal protein L34e superfamily pro...    96   2e-20
AT3G06180.1 | Symbols:  | Ribosomal protein L34e superfamily pro...    94   7e-20

>AT5G15260.1 | Symbols:  | Ribosomal protein L34e superfamily
           protein | chr5:4953646-4954350 REVERSE LENGTH=234
          Length = 234

 Score =  167 bits (422), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 104/240 (43%), Positives = 135/240 (56%), Gaps = 26/240 (10%)

Query: 1   MVYFDXXXXXXXXXVDQPPSMANSLDLGSKPRNRKAANSLQVPP-----------CQRSQ 49
           MVYF          VDQ P MA+S D     +  + ++S +              C  S+
Sbjct: 1   MVYFQNSISL----VDQSPIMAHSPDFHHHSKQSRTSSSNRKSSSSSCSSNFSVCCDGSR 56

Query: 50  SXXXXXXXXXXXXXXXXXXXXPYVKAVMTESFKIGGVIMNLMREEV--SGTPWIYVFIGV 107
           S                    PY+K +  +S +I   +  L++EE+  +  P +Y  I +
Sbjct: 57  SAAIDVVILIAVITSSGFLIFPYIKFITIKSVEIFSELSCLVKEEILRNPDPIVYGLIAL 116

Query: 108 FVACAVFTTWLLVA--STTRKCGNRYCKGLKKA-AEFDIQLETEDCVKNSPSLSKDGTVK 164
            ++C   + W++V    +  +CG   CKGL+KA AEFDIQLETEDCVK+S S       K
Sbjct: 117 SISCTALSAWMIVILLCSRHRCGKPNCKGLRKANAEFDIQLETEDCVKSSNS--GKSVSK 174

Query: 165 KGLFKLPCEHHRELEAELKKMAPPNGRAVLVLRAKCGCSVGRLEVPGPRK----NRKMKK 220
           KGLF+LP +HHRELEAELKKMAPPNGRAVLV RAKCGCSVGRLEVPGP+K     RK+KK
Sbjct: 175 KGLFELPRDHHRELEAELKKMAPPNGRAVLVFRAKCGCSVGRLEVPGPKKQQLQQRKVKK 234


>AT3G01170.1 | Symbols:  | Ribosomal protein L34e superfamily
           protein | chr3:58043-58690 FORWARD LENGTH=215
          Length = 215

 Score =  160 bits (406), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 126/214 (58%), Gaps = 20/214 (9%)

Query: 20  SMANSLD----LGSKPRNRKAANSL-------QVPPCQRSQSXXXXXXXXXXXXXXXXXX 68
           S+ NS+D      S P++R   N         + P C  SQS                  
Sbjct: 9   SVCNSVDPMIMSHSSPKSRNTRNKSSSSPTCSKFPVCDGSQSAAIDVVILIAVITACGFL 68

Query: 69  XXPYVKAVMTESFKIGGVIMNLMREEVSGTPWIYVFIGVFVACAVFTTWLLVA-STTRKC 127
             PYVK +  +S ++   +  L+++E+   P +Y  + + + CA  +TWL++   T ++C
Sbjct: 69  FFPYVKLITLKSIEVFSDLSLLVKQEILQNPIVYGSLALSIFCAAISTWLVILLCTMQRC 128

Query: 128 GNRYCKGLKKAAEFDIQLETEDCVKNSPSLSKDGTVKKGLFKLPCEHHRELEAELKKMAP 187
           G   CKGL+KA EFDIQLETE+CVK+S +       K+G+F+LP  HHRELEAELKKMAP
Sbjct: 129 GKPNCKGLRKAVEFDIQLETEECVKSSSN-------KRGMFELPRVHHRELEAELKKMAP 181

Query: 188 PNGRAVLVLRAKCGCSVGRLEVPGPRK-NRKMKK 220
           PNGRAVLV RA+CGCSV RL V GP+K  RK+KK
Sbjct: 182 PNGRAVLVFRARCGCSVRRLVVSGPKKQQRKIKK 215


>AT5G19025.1 | Symbols:  | Ribosomal protein L34e superfamily
           protein | chr5:6355220-6357083 REVERSE LENGTH=259
          Length = 259

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 74/110 (67%), Gaps = 15/110 (13%)

Query: 118 LLVASTTRKCGNRYCKGLKKAAEFDIQLETEDCVKNSPSLSKDGTVKKGLFKLPCEHHRE 177
           L   S +RKC N  CKG+KKA EFD+QL+TE+CVK+       G+VK+ + +LP +   E
Sbjct: 144 LCCGSRSRKCRNPKCKGMKKAMEFDLQLQTEECVKS-------GSVKE-IDRLPWKGGSE 195

Query: 178 -------LEAELKKMAPPNGRAVLVLRAKCGCSVGRLEVPGPRKNRKMKK 220
                  L AEL+KMAP NGRAVL+ R+KCGC + +LE  GP+++R+ KK
Sbjct: 196 SNPDYECLRAELRKMAPVNGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKK 245


>AT3G06180.1 | Symbols:  | Ribosomal protein L34e superfamily
           protein | chr3:1871705-1873554 FORWARD LENGTH=241
          Length = 241

 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 68/97 (70%), Gaps = 1/97 (1%)

Query: 124 TRKCGNRYCKGLKKAAEFDIQLETEDCVKNSPSLSKDGTVKKGLFKLPCEHHRELEAELK 183
           +RKC N  CKGLKKA EFD+QL+TE+CVK+  +   D    KG  +   ++   L AEL+
Sbjct: 132 SRKCRNPKCKGLKKAMEFDLQLQTEECVKSGATKEIDRLPWKGGSESNPDY-ECLRAELR 190

Query: 184 KMAPPNGRAVLVLRAKCGCSVGRLEVPGPRKNRKMKK 220
           +MAPPNGRAVL+ R++CGC V +LE  GP++ R+ KK
Sbjct: 191 RMAPPNGRAVLLFRSRCGCPVAKLEGWGPKRGRRHKK 227