Miyakogusa Predicted Gene

Lj1g3v2975890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2975890.1 tr|Q2HSY9|Q2HSY9_MEDTR Cyclin-like F-box
OS=Medicago truncatula GN=MtrDRAFT_AC150889g27v2 PE=4
SV=2,36.19,2e-17,seg,NULL; F-box domain,F-box domain, cyclin-like; no
description,NULL; SUBFAMILY NOT NAMED,NULL; FAM,CUFF.29773.1
         (274 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26922.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    49   4e-06
AT1G52650.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    49   4e-06
AT5G44940.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    49   5e-06
AT4G26340.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    48   7e-06

>AT3G26922.1 | Symbols:  | F-box/RNI-like superfamily protein |
           chr3:9922858-9923891 FORWARD LENGTH=306
          Length = 306

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 36/60 (60%)

Query: 55  NAEKMDYISELPDCILADILSMLSMKDMLNTCLLSKRLCNLWHLRRDLKFDQLNVLGSDE 114
           N    D IS+LP+ +L  ILSML +KD++ T +LSK   +LW L   LKFD  N    DE
Sbjct: 9   NGVNEDRISDLPEALLLQILSMLPVKDVVTTSVLSKPWRSLWKLVPTLKFDYENNQSEDE 68


>AT1G52650.1 | Symbols:  | F-box/RNI-like superfamily protein |
           chr1:19610643-19612417 FORWARD LENGTH=507
          Length = 507

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 28/159 (17%)

Query: 57  EKMDYISELPDCILADILSMLSMKDMLNTCLLSKRLCNLWHLRRDLKFDQLNVLGSDEEL 116
           EKMD++S LP+ +L +I S L+ K+   T +L KR  NL     +L  D  +V    EE 
Sbjct: 41  EKMDHVSSLPEGVLCNIFSFLTTKEAALTSILCKRWRNLLAFVPNLVIDD-SVFLHPEEG 99

Query: 117 RRAGYYVDVLKNGNQCEHLHLDVLRDEFVRRVDQFVKNFKGDIIDSIVVQFNLNLAESNI 176
           +   Y +                 +  F+  VD+ +       I    ++F  + A S+ 
Sbjct: 100 KEERYEI-----------------QQSFMEFVDRVLALQGNSPIKKFSLKFRTDFA-SHR 141

Query: 177 IDQWIRFAISKGAGRIDVL-------FLP--RRCYSSSN 206
           ++ WI   +++G   +DVL       FLP   +C+ S N
Sbjct: 142 VNAWISNVLARGVSELDVLVILYGAEFLPLSPKCFKSRN 180


>AT5G44940.1 | Symbols:  | F-box/RNI-like superfamily protein |
          chr5:18149369-18150892 FORWARD LENGTH=377
          Length = 377

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 27/40 (67%)

Query: 57 EKMDYISELPDCILADILSMLSMKDMLNTCLLSKRLCNLW 96
          E+ DYISE PDC+L  IL  L  KD + T +LSKR  NLW
Sbjct: 2  EEFDYISEFPDCLLTQILLNLPTKDSVKTSVLSKRWRNLW 41


>AT4G26340.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr4:13324130-13325559
           FORWARD LENGTH=419
          Length = 419

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 46/84 (54%)

Query: 59  MDYISELPDCILADILSMLSMKDMLNTCLLSKRLCNLWHLRRDLKFDQLNVLGSDEELRR 118
           MD IS+L D +L  ILS +  KD++ T LLSKR  +LW L  +L++D     G  +   +
Sbjct: 1   MDRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYHTGDYKSFSQ 60

Query: 119 AGYYVDVLKNGNQCEHLHLDVLRD 142
             Y   +  N    +HLHL++  D
Sbjct: 61  FVYRSLLSNNAPVIKHLHLNLGPD 84