Miyakogusa Predicted Gene

Lj1g3v2940700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2940700.1 Non Chatacterized Hit- tr|K4CNI8|K4CNI8_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,42.62,0.000000000000003,DUF761,Protein of unknown function
DUF761, plant; seg,NULL,CUFF.29718.1
         (1074 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60380.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   131   2e-30
AT4G16790.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...    63   9e-10

>AT3G60380.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 13 growth stages; BEST
           Arabidopsis thaliana protein match is:
           hydroxyproline-rich glycoprotein family protein
           (TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins
           in 424 species: Archae - 6; Bacteria - 372; Metazoa -
           2603; Fungi - 655; Plants - 291; Viruses - 28; Other
           Eukaryotes - 2147 (source: NCBI BLink). |
           chr3:22316913-22319144 REVERSE LENGTH=743
          Length = 743

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/279 (35%), Positives = 134/279 (48%), Gaps = 47/279 (16%)

Query: 48  SQAPEFVSQTALTKFWELLHLLFIGIAVTYGLFSRRNAELDSHVETHSSDGSSPSYVSKM 107
           SQAP+FV +T LTKFWEL+HLLF+GIAV YGLFSRRN E    +     D SS SYVS++
Sbjct: 51  SQAPDFVGETVLTKFWELIHLLFVGIAVAYGLFSRRNVESAVDLRMTRVDESSLSYVSRI 110

Query: 108 FPGSALFGDG-GENSSGFDEKRVMHCWDPPQNYDGEQPGGVCSNVGGTVGVFDEQYKPQL 166
           F  S++F +   +NS  F + R             E      S VG +        +   
Sbjct: 111 FQVSSVFDEEFDDNSCEFVDVR-----------SDESVSARASVVGKSESFV---VESGE 156

Query: 167 PIPEDNFGFPFRYDGNGTNVVQAWNSEYYHSEPVVVVAQPYVSAGESGEVVGHKPLGLPV 226
                 FG         TN V+AWNS+Y+  +  VVVA+P  + G  G VV H+PLGLP+
Sbjct: 157 LEESSEFG--------ETNEVRAWNSQYFQGKSKVVVARP--AYGLDGHVV-HQPLGLPI 205

Query: 227 RSLRSVAREGDGPNFINEXXXXXXXXXXXXXXXXXXXNREFGDLGPSNLEKQFNDAAAVG 286
           R LRS  R+                            N E   L   N    F++  A  
Sbjct: 206 RRLRSSLRDN-----------AALQDKSFADSCDGAVNAEAESLLADNF---FDEVLA-- 249

Query: 287 GSASPIPWRSRGGKMEREKSYGNVTHPSHFRPLSFDEAV 325
             ASP+PW++R   M      G+  +PS+F+P+S DE +
Sbjct: 250 APASPVPWQARPEMM----GIGD-NYPSNFQPISVDETL 283


>AT4G16790.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr4:9451747-9453168 REVERSE LENGTH=473
          Length = 473

 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 11/78 (14%)

Query: 48  SQAPEFVSQTALTKFWELLHLLFIGIAVTYGLFSRRNAELDSHVETHSSD--------GS 99
           SQ PE  +QT L    ELLHL+F+GIAV+YGLFSRRN +      T +SD         +
Sbjct: 47  SQTPELANQTRLL---ELLHLVFVGIAVSYGLFSRRNYDGGGGGGTSNSDHNKADHSNNN 103

Query: 100 SPSYVSKMFPGSALFGDG 117
           S SYV K+   S++F  G
Sbjct: 104 SHSYVPKILEVSSVFNVG 121