Miyakogusa Predicted Gene

Lj1g3v2940680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2940680.1 Non Chatacterized Hit- tr|K3YRB2|K3YRB2_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si016730,67.33,4e-19,CATIONIC AMINO ACID TRANSPORTER,Cationic amino
acid transporter; AMINO ACID TRANSPORTER,Amino acid/p,CUFF.29736.1
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05940.1 | Symbols: CAT9 | cationic amino acid transporter 9 ...    83   3e-17
AT5G36940.1 | Symbols: CAT3 | cationic amino acid transporter 3 ...    50   4e-07

>AT1G05940.1 | Symbols: CAT9 | cationic amino acid transporter 9 |
           chr1:1801365-1803942 REVERSE LENGTH=569
          Length = 569

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 43/43 (100%)

Query: 72  FVITGTVARDAGPGVTISFILAGASCVINALCFAELASRFPAV 114
           FV+TGTVARDAGPGVTISF+LAGASCV+NALC+AEL+SRFPAV
Sbjct: 71  FVVTGTVARDAGPGVTISFLLAGASCVLNALCYAELSSRFPAV 113


>AT5G36940.1 | Symbols: CAT3 | cationic amino acid transporter 3 |
           chr5:14590330-14594137 FORWARD LENGTH=609
          Length = 609

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 35/43 (81%), Gaps = 1/43 (2%)

Query: 72  FVITGTVARD-AGPGVTISFILAGASCVINALCFAELASRFPA 113
           +++ GTVAR+ +GP + +SF++AG S  ++A C+AEL+SRFP+
Sbjct: 52  YILVGTVAREHSGPALALSFLIAGISAALSAFCYAELSSRFPS 94