Miyakogusa Predicted Gene

Lj1g3v2939610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2939610.1 tr|E9JRK5|E9JRK5_SETIT Ubiquitin-protein ligase
(Fragment) OS=Setaria italica PE=4
SV=1,79.07,0.000000001,seg,NULL,CUFF.29716.1
         (178 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44900.1 | Symbols: ARABIDILLO-1, ARABIDILLO1 | ARABIDILLO-1 ...   197   4e-51
AT3G60350.1 | Symbols: ARABIDILLO-2, ARABIDILLO2 | ARABIDILLO-2 ...   184   2e-47

>AT2G44900.1 | Symbols: ARABIDILLO-1, ARABIDILLO1 | ARABIDILLO-1 |
           chr2:18511719-18515762 REVERSE LENGTH=930
          Length = 930

 Score =  197 bits (500), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 107/179 (59%), Positives = 116/179 (64%), Gaps = 3/179 (1%)

Query: 1   MARFMAALALSYMFDGRMDEFAL--AGLMSESISKIAASLDGARKMALKHIETFVHMFXX 58
           MARFMAALAL+YMFDGRMDE+AL      SES SK   SLDGAR MALKHIE FV  F  
Sbjct: 752 MARFMAALALAYMFDGRMDEYALMIGTSSSESTSK-NISLDGARNMALKHIEAFVLSFID 810

Query: 59  XXXXXXXXXXXXXXXXXXVTDGARIQEAGHLRCSGSEIGRFVTMLRNPSPILKSCAAFAL 118
                             VT+ ARIQEAGHLRCSG+EIGRFVTMLRNP   LK+CAAFAL
Sbjct: 811 PHIFESPVVSSTPTMLAQVTERARIQEAGHLRCSGAEIGRFVTMLRNPDSTLKACAAFAL 870

Query: 119 LQFTIPGGRHAGHHASLMQNXXXXXXXXXXXXXXXXXXXXKIFARIVLRNLEYHQIEHT 177
           LQFTIPGGRHA HH SLMQN                    KIF +I+LRNLE+HQ E +
Sbjct: 871 LQFTIPGGRHAMHHVSLMQNGGESRFLRSAAASAKTPREAKIFTKILLRNLEHHQAESS 929


>AT3G60350.1 | Symbols: ARABIDILLO-2, ARABIDILLO2 | ARABIDILLO-2 |
           chr3:22306806-22310596 REVERSE LENGTH=928
          Length = 928

 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/175 (55%), Positives = 112/175 (64%), Gaps = 1/175 (0%)

Query: 1   MARFMAALALSYMFDGRMDEFALAGLMSESISKIAASLDGARKMALKHIETFVHMFXXXX 60
           MARFMAALAL+YMFDGRMDE+A+ G   ES SK + +L+GAR MAL  I+ F+  F    
Sbjct: 743 MARFMAALALAYMFDGRMDEYAMIGTSLESTSK-SVTLNGARTMALDQIKAFIKTFMEHQ 801

Query: 61  XXXXXXXXXXXXXXXXVTDGARIQEAGHLRCSGSEIGRFVTMLRNPSPILKSCAAFALLQ 120
                           V++ ARI EAGHLRCSGSEIGRFVTMLRNP  +L++CAAFALLQ
Sbjct: 802 IFSTGALSSAPSMLAQVSERARIPEAGHLRCSGSEIGRFVTMLRNPCLVLRACAAFALLQ 861

Query: 121 FTIPGGRHAGHHASLMQNXXXXXXXXXXXXXXXXXXXXKIFARIVLRNLEYHQIE 175
           FTIP  RHA HHASLMQN                    KIF +IVLRNLE+ Q E
Sbjct: 862 FTIPESRHAMHHASLMQNAGEARGLRSAAAAASMPREAKIFMKIVLRNLEHQQAE 916