Miyakogusa Predicted Gene

Lj1g3v2938530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2938530.1 tr|A9TYX6|A9TYX6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_99121
,42.59,5e-16, ,NODE_26530_length_476_cov_259.239502.path1.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51080.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   150   2e-37

>AT1G51080.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11
           growth stages; Has 101 Blast hits to 98 proteins in 44
           species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi -
           10; Plants - 27; Viruses - 0; Other Eukaryotes - 26
           (source: NCBI BLink). | chr1:18929883-18930740 REVERSE
           LENGTH=285
          Length = 285

 Score =  150 bits (379), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 88/117 (75%), Gaps = 5/117 (4%)

Query: 1   MLGSLPSSYLKWVSKNLRAGDSEEWAKLADQVLGDPIYRDRIEWELALNVLNGNSSSSRQ 60
           MLG+LPSSYLKWVSKNLRAG  E WAKLAD+VL D +Y+DR EWE A  +L+G+  S R 
Sbjct: 77  MLGTLPSSYLKWVSKNLRAGVFEYWAKLADEVLEDDVYKDRTEWEFAEKILHGSDESMRA 136

Query: 61  PTSTRGG-----AVSELEEISERFGWDNLDKIGWGKLDFDLLGTSKGGRIPRLVNLN 112
            TS R       +VS L EISERFGWDN DKIGW K++F+LLGTSKGGRIPRL   N
Sbjct: 137 LTSVRKSREEVNSVSMLLEISERFGWDNEDKIGWSKINFELLGTSKGGRIPRLRKAN 193