Miyakogusa Predicted Gene

Lj1g3v2938510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2938510.1 63373_g.1
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53670.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    70   1e-12

>AT5G53670.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: sperm cell; Has 1807 Blast hits to
           1807 proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:21796997-21797731 FORWARD LENGTH=244
          Length = 244

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 17/167 (10%)

Query: 18  TSTPDAVDLYEKWERSNCLSVSFIKTNISAGIRGSV-DYLTNVKDLLKAIDEQFATSDKA 76
           T  P +    + W+RSN +S+  +K  I  G RG V D +T  KD L +++  FA +++A
Sbjct: 68  TERPSSPKELKHWDRSNRVSIMIMKIRIPQGFRGVVPDDVTTAKDFLASLENFFAKNEEA 127

Query: 77  LASTLTIQFSSMKLTGVKGVRDHIMRMRDIAAQLKSLEVT---MSDSFMVHYILCSLPHQ 133
             S +  + SSM     + VR+ IMRM+ + A+ K L +     +D  + H  +  LP Q
Sbjct: 128 ERSRVQAESSSMSYIENENVRELIMRMKTLGAKRKRLGINNIFSNDMMLAHCAVKMLPLQ 187

Query: 134 YAPFKISYNTHKDKL-------------SIHELLTMCVQEEERLMLE 167
           Y   K  Y+  + K              S  EL++ C  EEE L  E
Sbjct: 188 YISLKNVYSCLEGKFVNENGRWHTGEIWSTKELISRCDMEEETLRTE 234