Miyakogusa Predicted Gene

Lj1g3v2927320.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2927320.2 tr|B9MVA0|B9MVA0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_591787 PE=4
SV=1,42.37,0.000000000000001,UPF0565,Uncharacterised protein family
UPF0565,CUFF.29704.2
         (327 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44850.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   357   8e-99
AT2G44850.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   317   8e-87

>AT2G44850.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 13 plant
           structures; EXPRESSED DURING: M germinated pollen stage,
           LP.04 four leaves visible, 4 anthesis, petal
           differentiation and expansion stage, E expanded
           cotyledon stage; CONTAINS InterPro DOMAIN/s:
           Uncharacterised protein family UPF0565
           (InterPro:IPR018881); Has 106 Blast hits to 106 proteins
           in 50 species: Archae - 0; Bacteria - 0; Metazoa - 73;
           Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes -
           2 (source: NCBI BLink). | chr2:18499770-18500823 FORWARD
           LENGTH=319
          Length = 319

 Score =  357 bits (915), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 180/327 (55%), Positives = 246/327 (75%), Gaps = 8/327 (2%)

Query: 1   MERWSGVLRVPLHPNSKAFHRVGASLCLSPETGTLSVPIANAIFFCGDRVEGTGNPVIER 60
           MERWSGVL++PL   +  ++RV ASLCLS  + TL+VP ANAIFF GD+V+ TGN VIER
Sbjct: 1   MERWSGVLKIPLDATTSNYYRVAASLCLSS-SKTLTVPSANAIFFHGDKVQDTGNHVIER 59

Query: 61  LSDLQKLSEIVVSKFGSFINAWVIESSVYKGPFAVYKDFIPSVNQYGEPSSYHPIGFPAS 120
           L DLQK++EI+VSKFG+ +NAWV+E+SV+ GPFA+YKDF+PSVN  G P SY P+GFPAS
Sbjct: 60  LYDLQKVAEIIVSKFGNSVNAWVVEASVFNGPFAIYKDFVPSVNHMGAPKSYSPVGFPAS 119

Query: 121 TSTVSLLSNCLEEVKKVILGKQVDTKFVHTPSCCSSQPKTFILGFSKGGTVLNQIVTELG 180
           +S VSLLS+CL EV    L +  D   +   +     PKT +LGFSKGG V+NQ+++E+ 
Sbjct: 120 SSIVSLLSSCLHEV----LKEGTDVCLIDQIASVHHCPKTIVLGFSKGGVVMNQLMSEI- 174

Query: 181 FSDIGSNPYPLDAGQPMDRKISRSEEIYVVPKTKEGLLNSISEIHYVDVGLNSTGAYLTN 240
            S + +N +   +   ++   S+ E+I ++P +KE  LNSISE+HY+DVGLNS+GAY+T+
Sbjct: 175 -SSLDTN-FAKTSSAMVEESTSQHEKIQIIPASKESFLNSISEVHYIDVGLNSSGAYITD 232

Query: 241 LEVFEGISKRLIQGAPKLRFILHGTPRQWGDKRRDWIRKEKDGMLHLLESEACKSGGKLQ 300
             V + IS+RL +GA  LR ++HGTPRQW D+ R WIRKEKD ++ LL++E   SGGKLQ
Sbjct: 233 HNVVQRISQRLARGADSLRIVIHGTPRQWCDELRGWIRKEKDELVRLLKAETENSGGKLQ 292

Query: 301 VFARYYFADKPSNMQMHFEIIESLDVS 327
           V  R+YF+D+ +++QMHFEII+++DVS
Sbjct: 293 VCERFYFSDRLADLQMHFEIIDAMDVS 319


>AT2G44850.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Uncharacterised protein family UPF0565
           (InterPro:IPR018881); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT2G45380.1); Has 138
           Blast hits to 138 proteins in 53 species: Archae - 0;
           Bacteria - 0; Metazoa - 73; Fungi - 0; Plants - 62;
           Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
           | chr2:18498672-18500823 FORWARD LENGTH=400
          Length = 400

 Score =  317 bits (811), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 159/291 (54%), Positives = 216/291 (74%), Gaps = 7/291 (2%)

Query: 37  VPIANAIFFCGDRVEGTGNPVIERLSDLQKLSEIVVSKFGSFINAWVIESSVYKGPFAVY 96
           VP ANAIFF GD+V+ TGN VIERL DLQK++EI+VSKFG+ +NAWV+E+SV+ GPFA+Y
Sbjct: 117 VPSANAIFFHGDKVQDTGNHVIERLYDLQKVAEIIVSKFGNSVNAWVVEASVFNGPFAIY 176

Query: 97  KDFIPSVNQYGEPSSYHPIGFPASTSTVSLLSNCLEEVKKVILGKQVDTKFVHTPSCCSS 156
           KDF+PSVN  G P SY P+GFPAS+S VSLLS+CL EV    L +  D   +   +    
Sbjct: 177 KDFVPSVNHMGAPKSYSPVGFPASSSIVSLLSSCLHEV----LKEGTDVCLIDQIASVHH 232

Query: 157 QPKTFILGFSKGGTVLNQIVTELGFSDIGSNPYPLDAGQPMDRKISRSEEIYVVPKTKEG 216
            PKT +LGFSKGG V+NQ+++E+   D     +   +   ++   S+ E+I ++P +KE 
Sbjct: 233 CPKTIVLGFSKGGVVMNQLMSEISSLDTN---FAKTSSAMVEESTSQHEKIQIIPASKES 289

Query: 217 LLNSISEIHYVDVGLNSTGAYLTNLEVFEGISKRLIQGAPKLRFILHGTPRQWGDKRRDW 276
            LNSISE+HY+DVGLNS+GAY+T+  V + IS+RL +GA  LR ++HGTPRQW D+ R W
Sbjct: 290 FLNSISEVHYIDVGLNSSGAYITDHNVVQRISQRLARGADSLRIVIHGTPRQWCDELRGW 349

Query: 277 IRKEKDGMLHLLESEACKSGGKLQVFARYYFADKPSNMQMHFEIIESLDVS 327
           IRKEKD ++ LL++E   SGGKLQV  R+YF+D+ +++QMHFEII+++DVS
Sbjct: 350 IRKEKDELVRLLKAETENSGGKLQVCERFYFSDRLADLQMHFEIIDAMDVS 400