Miyakogusa Predicted Gene
- Lj1g3v2923020.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2923020.1 Non Chatacterized Hit- tr|I3STC5|I3STC5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.19,0,seg,NULL;
HABP4_PAI-RBP1,Hyaluronan/mRNA-binding protein; Stm1_N,Stm1,
N-terminal; NUCLEAR RNA BINDI,CUFF.30385.1
(370 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G17520.1 | Symbols: | Hyaluronan / mRNA binding family | chr... 167 9e-42
AT4G16830.1 | Symbols: | Hyaluronan / mRNA binding family | chr... 154 1e-37
AT4G16830.3 | Symbols: | Hyaluronan / mRNA binding family | chr... 152 3e-37
AT4G16830.2 | Symbols: | Hyaluronan / mRNA binding family | chr... 152 4e-37
AT5G47210.1 | Symbols: | Hyaluronan / mRNA binding family | chr... 134 1e-31
AT5G47210.3 | Symbols: | Hyaluronan / mRNA binding family | chr... 113 2e-25
AT5G47210.2 | Symbols: | Hyaluronan / mRNA binding family | chr... 73 2e-13
>AT4G17520.1 | Symbols: | Hyaluronan / mRNA binding family |
chr4:9771496-9773313 FORWARD LENGTH=360
Length = 360
Score = 167 bits (424), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 128/384 (33%), Positives = 163/384 (42%), Gaps = 41/384 (10%)
Query: 1 MATMNPFDLLGDDAEDPSQLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPSKPL 60
MA++NPFDLL DDAEDPSQ++ MP+KP
Sbjct: 1 MASVNPFDLLDDDAEDPSQIVASKPLKVVAPVQTAKSGK---------------MPTKPP 45
Query: 61 PPAQAVRDARNEPSXXXXXXXXXXXXXXXXXXXXNRDFSNDENSFPASGAPDNLGPFEGD 120
PP+QAVR+ARN P NRD N++ P N + G
Sbjct: 46 PPSQAVREARNAPGGGRGAGRGGSYGRGGRGGN-NRDSRNND-------GPANENGYGGG 97
Query: 121 SEKASEXXXXXXXXXXXXXXXXXXXXXFSNGEADEEGRPRRAFERHSGTGRGSGFKREGA 180
++ E + G++ + RPR+ ++RHS T G+ KR+GA
Sbjct: 98 YRRSEEGDGARRGGPVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGA 157
Query: 181 GRGNWGTQSDEIAQVTDEVANETEKNLSDEKPAVEDVADGXXXXXXXXXXXXXXXXXXXX 240
GR NWGT D+I VT+E +KNL+ EK E A
Sbjct: 158 GRANWGTTQDDITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPAEKAEEKPEDKEMT 217
Query: 241 XXXYEKVLEEKRKALQAQKTEGRKVDIKEFESMQPLSCKKDNND-IFAKLGSXXXXXXXX 299
YEKVLEEK+KALQA K E RKVD K FE+MQ LS KK NND +F KLG+
Sbjct: 218 LEEYEKVLEEKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGT--EKDKRI 275
Query: 300 XXXXXXXXXSVSINEFLKPAEGETYY---------------PXXXXXXXXXXXXXXXXXX 344
S+SINEFLKPA+G++YY
Sbjct: 276 TEREEKTRKSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRNQ 335
Query: 345 XXXNATSNAPAPSIEDPGHFPTLG 368
A + AP P+I D FPTLG
Sbjct: 336 RDGGAAAQAPTPAIGDSAQFPTLG 359
>AT4G16830.1 | Symbols: | Hyaluronan / mRNA binding family |
chr4:9470621-9472308 FORWARD LENGTH=355
Length = 355
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 122/224 (54%), Gaps = 6/224 (2%)
Query: 148 FSNGEADEEGRPRRAFERHSGTGRGSGFKREGAGRGNWGTQSDEIAQVTDEVAN-ETEKN 206
FSN D E RPRRAFER SGTGRGS FKR+G+GRGNWGT +EIA T+ VA ETEK+
Sbjct: 137 FSNEGGDGE-RPRRAFERRSGTGRGSDFKRDGSGRGNWGTPGEEIAAETEAVAGVETEKD 195
Query: 207 LSDEKPAVEDVADGXXXXXXXXXXXXXXXXXXXXXXXYEKVLEEKRKALQAQKTEGRKVD 266
+ EKPAV+DVA YEK+LEEK+KALQ+ T RKVD
Sbjct: 196 VG-EKPAVDDVA-ADANKEDTVVEEKEPEDKEMTLDEYEKILEEKKKALQSLTTSERKVD 253
Query: 267 IKEFESMQPLSCKKDNNDIFAKLGSXXXXXXXXXXXXXXXXXSVSINEFLKPAEGETYYP 326
K FESMQ LS KK N++IF KLGS +VSINEFLKPAEG YY
Sbjct: 254 TKVFESMQQLSNKKSNDEIFIKLGS--DKDKRKDDKEEKAKKAVSINEFLKPAEGGNYYR 311
Query: 327 XXXXXXXXXXXXXXXXXXXXXNATSNAPAPSIEDPGHFPTLGGK 370
N AP+I D FP+LGGK
Sbjct: 312 GGRGGRGRGGRGRGGVSSGESGGYRNEAAPAIGDAAQFPSLGGK 355
>AT4G16830.3 | Symbols: | Hyaluronan / mRNA binding family |
chr4:9470652-9472308 FORWARD LENGTH=345
Length = 345
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 122/224 (54%), Gaps = 6/224 (2%)
Query: 148 FSNGEADEEGRPRRAFERHSGTGRGSGFKREGAGRGNWGTQSDEIAQVTDEVAN-ETEKN 206
FSN D E RPRRAFER SGTGRGS FKR+G+GRGNWGT +EIA T+ VA ETEK+
Sbjct: 127 FSNEGGDGE-RPRRAFERRSGTGRGSDFKRDGSGRGNWGTPGEEIAAETEAVAGVETEKD 185
Query: 207 LSDEKPAVEDVADGXXXXXXXXXXXXXXXXXXXXXXXYEKVLEEKRKALQAQKTEGRKVD 266
+ EKPAV+DVA YEK+LEEK+KALQ+ T RKVD
Sbjct: 186 VG-EKPAVDDVA-ADANKEDTVVEEKEPEDKEMTLDEYEKILEEKKKALQSLTTSERKVD 243
Query: 267 IKEFESMQPLSCKKDNNDIFAKLGSXXXXXXXXXXXXXXXXXSVSINEFLKPAEGETYYP 326
K FESMQ LS KK N++IF KLGS +VSINEFLKPAEG YY
Sbjct: 244 TKVFESMQQLSNKKSNDEIFIKLGS--DKDKRKDDKEEKAKKAVSINEFLKPAEGGNYYR 301
Query: 327 XXXXXXXXXXXXXXXXXXXXXNATSNAPAPSIEDPGHFPTLGGK 370
N AP+I D FP+LGGK
Sbjct: 302 GGRGGRGRGGRGRGGVSSGESGGYRNEAAPAIGDAAQFPSLGGK 345
>AT4G16830.2 | Symbols: | Hyaluronan / mRNA binding family |
chr4:9470979-9472308 FORWARD LENGTH=265
Length = 265
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 117/214 (54%), Gaps = 5/214 (2%)
Query: 158 RPRRAFERHSGTGRGSGFKREGAGRGNWGTQSDEIAQVTDEVAN-ETEKNLSDEKPAVED 216
RPRRAFER SGTGRGS FKR+G+GRGNWGT +EIA T+ VA ETEK++ EKPAV+D
Sbjct: 56 RPRRAFERRSGTGRGSDFKRDGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDD 114
Query: 217 VADGXXXXXXXXXXXXXXXXXXXXXXXYEKVLEEKRKALQAQKTEGRKVDIKEFESMQPL 276
VA YEK+LEEK+KALQ+ T RKVD K FESMQ L
Sbjct: 115 VA-ADANKEDTVVEEKEPEDKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQL 173
Query: 277 SCKKDNNDIFAKLGSXXXXXXXXXXXXXXXXXSVSINEFLKPAEGETYYPXXXXXXXXXX 336
S KK N++IF KLGS +VSINEFLKPAEG YY
Sbjct: 174 SNKKSNDEIFIKLGS--DKDKRKDDKEEKAKKAVSINEFLKPAEGGNYYRGGRGGRGRGG 231
Query: 337 XXXXXXXXXXXNATSNAPAPSIEDPGHFPTLGGK 370
N AP+I D FP+LGGK
Sbjct: 232 RGRGGVSSGESGGYRNEAAPAIGDAAQFPSLGGK 265
>AT5G47210.1 | Symbols: | Hyaluronan / mRNA binding family |
chr5:19169222-19171012 REVERSE LENGTH=357
Length = 357
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 130/380 (34%), Positives = 159/380 (41%), Gaps = 35/380 (9%)
Query: 1 MATMNPFDLLGDDAEDPSQLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPSKPL 60
MA++NPFDLLGDDAEDPSQL P+KP
Sbjct: 1 MASLNPFDLLGDDAEDPSQL------------AVALSQKVEKAAAAVQPPKAAKFPTKPA 48
Query: 61 PPAQAVRDARNEPSXXXXXXXXXXXXXXXXXXXX-NRDFSNDENSFPASGAPDNLGPFEG 119
PP+QAVR++RN P NRD N++ AP N F G
Sbjct: 49 PPSQAVRESRNAPQGGRGGTGGRGGFSRGRGNGGYNRDNRNND-------APGNENGFSG 101
Query: 120 DSEKASEXXXXXXXXXXXXXXXXXXXXX------FSNGEADEEGRPRRAFERHSGTGRGS 173
+ SE +NGE+ + RP R ++RHS TG G+
Sbjct: 102 GYRRPSEDADGASRGGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGT 161
Query: 174 GFKREGAGRGNWGTQSDEIAQVTDEVANETEKNLSDEKPAVED----VADGXXXXXXXXX 229
G KR G GRGNWGT D+I ++E E EK+ EK ED
Sbjct: 162 GMKRNGGGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQK 221
Query: 230 XXXXXXXXXXXXXXYEKVLEEKRKALQAQKTEGRKVDIKEFESMQPLSCKKDNN-DIFAK 288
YEK+LEEK+KALQA K E RKVD K FESMQ LS KK+ + +IF K
Sbjct: 222 EAEEAEAREMTLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIK 281
Query: 289 LGSXXXXXXXXXXXXXXXXXSVSINEFLKPAEGETYYPXXXXXXXXXXXXXXXXXXXXXN 348
LGS S+SINEFLKPA+G+ Y
Sbjct: 282 LGS---DKEKRKDATEKAKKSLSINEFLKPADGKRYNGRGGGSRGRGGRGGRGEGGNQRY 338
Query: 349 ATSNAPAPSIEDPGHFPTLG 368
A A AP+I D FP+LG
Sbjct: 339 A-KEAAAPAIGDTAQFPSLG 357
>AT5G47210.3 | Symbols: | Hyaluronan / mRNA binding family |
chr5:19169388-19171012 REVERSE LENGTH=301
Length = 301
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 132/303 (43%), Gaps = 31/303 (10%)
Query: 1 MATMNPFDLLGDDAEDPSQLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPSKPL 60
MA++NPFDLLGDDAEDPSQL P+KP
Sbjct: 1 MASLNPFDLLGDDAEDPSQL------------AVALSQKVEKAAAAVQPPKAAKFPTKPA 48
Query: 61 PPAQAVRDARNEPSXXXXXXXXXXXXXXXXXXXX-NRDFSNDENSFPASGAPDNLGPFEG 119
PP+QAVR++RN P NRD N++ AP N F G
Sbjct: 49 PPSQAVRESRNAPQGGRGGTGGRGGFSRGRGNGGYNRDNRNND-------APGNENGFSG 101
Query: 120 DSEKASEXXXXXXXXXXXXXXXXXXXXX------FSNGEADEEGRPRRAFERHSGTGRGS 173
+ SE +NGE+ + RP R ++RHS TG G+
Sbjct: 102 GYRRPSEDADGASRGGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGT 161
Query: 174 GFKREGAGRGNWGTQSDEIAQVTDEVANETEKNLSDEKPAVED----VADGXXXXXXXXX 229
G KR G GRGNWGT D+I ++E E EK+ EK ED
Sbjct: 162 GMKRNGGGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQK 221
Query: 230 XXXXXXXXXXXXXXYEKVLEEKRKALQAQKTEGRKVDIKEFESMQPLSCKKDNN-DIFAK 288
YEK+LEEK+KALQA K E RKVD K FESMQ LS KK+ + +IF K
Sbjct: 222 EAEEAEAREMTLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIK 281
Query: 289 LGS 291
LGS
Sbjct: 282 LGS 284
>AT5G47210.2 | Symbols: | Hyaluronan / mRNA binding family |
chr5:19169155-19171012 REVERSE LENGTH=305
Length = 305
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 104/265 (39%), Gaps = 30/265 (11%)
Query: 1 MATMNPFDLLGDDAEDPSQLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPSKPL 60
MA++NPFDLLGDDAEDPSQL P+KP
Sbjct: 1 MASLNPFDLLGDDAEDPSQL------------AVALSQKVEKAAAAVQPPKAAKFPTKPA 48
Query: 61 PPAQAVRDARNEPSXXXXXXXXXXXXXXXXXXXX-NRDFSNDENSFPASGAPDNLGPFEG 119
PP+QAVR++RN P NRD N++ AP N F G
Sbjct: 49 PPSQAVRESRNAPQGGRGGTGGRGGFSRGRGNGGYNRDNRNND-------APGNENGFSG 101
Query: 120 DSEKASE------XXXXXXXXXXXXXXXXXXXXXFSNGEADEEGRPRRAFERHSGTGRGS 173
+ SE +NGE+ + RP R ++RHS TG G+
Sbjct: 102 GYRRPSEDADGASRGGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGT 161
Query: 174 GFKREGAGRGNWGTQSDEIAQVTDEVANETEKNLSDEKPAVED----VADGXXXXXXXXX 229
G KR G GRGNWGT D+I ++E E EK+ EK ED
Sbjct: 162 GMKRNGGGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQK 221
Query: 230 XXXXXXXXXXXXXXYEKVLEEKRKA 254
YEK+LEEK+KA
Sbjct: 222 EAEEAEAREMTLEEYEKILEEKKKA 246