Miyakogusa Predicted Gene

Lj1g3v2908510.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2908510.1 tr|A9U0Y0|A9U0Y0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_173084,33.83,0.00000000000004,Small MutS-related
domain,Smr protein/MutS2 C-terminal; Smr,Smr protein/MutS2 C-terminal;
DUF1771,Do,CUFF.29661.1
         (433 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23520.1 | Symbols:  | smr (Small MutS Related) domain-contai...   300   2e-81

>AT5G23520.1 | Symbols:  | smr (Small MutS Related)
           domain-containing protein | chr5:7929591-7931296 REVERSE
           LENGTH=435
          Length = 435

 Score =  300 bits (767), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 190/443 (42%), Positives = 256/443 (57%), Gaps = 29/443 (6%)

Query: 12  MSSARGQSSGWAAFDLKQRKKNNLESDADKDPFPALGTSSSMQHVDNKLAKKNRVPS-KP 70
           MS  +G+SSGW AFDLKQR+K  LES+ + DPFP + TS +         ++N  PS K 
Sbjct: 1   MSWMKGKSSGWTAFDLKQRQKQGLESEVEGDPFPPVSTSVNASFGVRGRLRRNHEPSEKS 60

Query: 71  FSSVILPAKNFPPL---KEGGNGKKTMLVFDSTEKCHGNTVQGDVN---LAIKRLKEQHL 124
           FSSV+LP   FP L   K+ GN ++         +   +T+   VN   LA  +LKE + 
Sbjct: 61  FSSVLLPPSRFPALTENKDCGNQERGGCC-----RRKPDTLSLPVNSHDLAFTKLKEMNS 115

Query: 125 WAENSLIEDILAAVDNNVNKASALLETMASAVNFEDNNVSSDPRATTSDDITDESLTLE- 183
           WA+++LI D+L + +++   A A L+ M S+   ED   +S     +SD+   E  T E 
Sbjct: 116 WADDNLIRDVLLSTEDDFEMALAFLKGMVSSGK-EDEEPTSKIEGYSSDNRRSEYRTFEK 174

Query: 184 NVKDDI------PFRSNLVSHLQDNDEDSEVRNASSDQKF-SGVDNLRFKMNILYSVPVE 236
            V   +       F       L+++D  S + NAS ++KF   +  L   +  L S+P+E
Sbjct: 175 TVTSSVKMAARSTFEDAGKYDLENSDGSSFLVNASDNEKFPDDISELDSIIQRLQSIPIE 234

Query: 237 PEWEDDDVYNSHRKDALRTMXXXXXXXXXXXXXFLKGDHYSAQQHSMKAREEWHAADKLN 296
           PEWE+DD+Y SHRKDAL+ M             F + DH SA+QHS KARE+W AA+KLN
Sbjct: 235 PEWEEDDLYLSHRKDALKVMRSASNHSRAAQNAFQRYDHASAKQHSDKAREDWLAAEKLN 294

Query: 297 TEAATKILGIRNNENDIWKLDLHGLHAAEAIQALQGHLYKIESQGFPKNTATSSVKENGL 356
            EAA KI+GI N +NDIWKLDLHGLHA EA+QALQ  L  IE   F  N + S  +    
Sbjct: 295 AEAAKKIIGITNKDNDIWKLDLHGLHATEAVQALQERLQMIEGH-FTVNRSVSPNRGRS- 352

Query: 357 AHSTIRSLNVTNRENLDKQAPLRLRSS------ALHVITGIGNHSRGQAALPSAVRNFLI 410
            ++ +RS +      LD++     R+S      +L VITGIG HSRGQA+LP AV+ F  
Sbjct: 353 KNAALRSASQEPFGRLDEEGMHCQRTSSRELRNSLQVITGIGKHSRGQASLPLAVKTFFE 412

Query: 411 ENRYRFEETRPGAITVWPKFRQS 433
           +NRYRF+ETRPG ITV PKFR S
Sbjct: 413 DNRYRFDETRPGVITVRPKFRHS 435