Miyakogusa Predicted Gene
- Lj1g3v2898460.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2898460.3 Non Chatacterized Hit- tr|K4A243|K4A243_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si032940,43.93,2e-18,RRM_1,RNA recognition motif domain; RRM,RNA
recognition motif domain; SUBFAMILY NOT NAMED,NULL; FAMI,CUFF.29669.3
(328 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 126 2e-29
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-07
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 7e-07
AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-07
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 52 8e-07
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 51 9e-07
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 6e-06
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 6e-06
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 6e-06
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 6e-06
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 7e-06
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 48 7e-06
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 48 7e-06
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 71/84 (84%)
Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
G LDK A+E DLKKVF VG +TEVR++ NPQTK++KG AFLRF TVEQAK+A+ ELK+P
Sbjct: 219 GSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSP 278
Query: 263 VINGKQCGVAPCQDSDTLYLGNIC 286
+INGK+CGV QD+DTL++GNIC
Sbjct: 279 MINGKKCGVTASQDNDTLFVGNIC 302
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
GGL + E DL+ + ++G I EVRLM + + +KG+AF+ F+T + A+KA+ EL +
Sbjct: 121 GGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSK 180
Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
GK + + + L++GNI
Sbjct: 181 EFKGKTIRCSLSETKNRLFIGNI 203
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
GGL + E DL+ + ++G I EVRLM + + +KG+AF+ F+T + A+KA+ EL +
Sbjct: 121 GGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSK 180
Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
GK + + + L++GNI
Sbjct: 181 EFKGKTIRCSLSETKNRLFIGNI 203
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
GGL + E DL+ + ++G I EVRLM + + +KG+AF+ F+T + A+KA+ EL +
Sbjct: 101 GGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSK 160
Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
GK + + + L++GNI
Sbjct: 161 EFKGKTIRCSLSETKNRLFIGNI 183
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
GGL TE L + FSK G + E +++M+ + R+KGF F+ F + ++A+KAL+E
Sbjct: 39 GGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQ 98
Query: 263 VINGK 267
+NG+
Sbjct: 99 QLNGR 103
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
GG+ ATE DLK +G +TEVR+M + KG+AF+ F + + A +A+ L N
Sbjct: 97 GGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNT 156
Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
GK+ + Q L+LGN+
Sbjct: 157 DFRGKRIKCSTTQAKHRLFLGNV 179
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
GG+ ATE DLK +G +TEVR+M + KG+AF+ F + + A +A+ L N
Sbjct: 97 GGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNT 156
Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
GK+ + Q L+LGN+
Sbjct: 157 DFRGKRIKCSTTQAKHRLFLGNV 179
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
GGL + E DL+ + ++G I EVRLM + + +KG+AF+ F+T + A+KA+ EL +
Sbjct: 121 GGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSK 180
Query: 263 VINGKQCGVAPCQDSDTLYLGNI 285
S+ L++GNI
Sbjct: 181 EFKASSTANCSLSLSNRLFIGNI 203
>AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2258816-2259586 REVERSE LENGTH=129
Length = 129
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 204 GLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNPV 263
GL TE DL+ F+K G +T+V L+++P T+ ++GF F+ ++V A + + L + V
Sbjct: 51 GLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSV 110
Query: 264 INGK 267
+ G+
Sbjct: 111 LQGR 114
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 205 LDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNPVI 264
L T+ L+++FS G I E RL+ + +T+R KGF F+ F++ + A+KAL L ++
Sbjct: 14 LSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIV 73
Query: 265 NGKQCGVAPCQDSDTLYLG 283
+G+ V ++++ + G
Sbjct: 74 DGRLIFVEVAKNAEEVRAG 92
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 204 GLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNPV 263
GL +E L+ F G + EV+++M+ +KR+KG+AFL + T E A AL E+ +
Sbjct: 288 GLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKI 347
Query: 264 ING 266
ING
Sbjct: 348 ING 350
>AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2257732-2260101 REVERSE LENGTH=382
Length = 382
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 204 GLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNPV 263
GL TE DL+ F+K G +T+V L+++P T+ ++GF F+ ++V A + + L + V
Sbjct: 81 GLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSV 140
Query: 264 INGK 267
+ G+
Sbjct: 141 LQGR 144
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
GGL EH LK FS +TE R+M N T R++G+ F+ F + + A A+ +
Sbjct: 36 GGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQ 95
Query: 263 VINGKQCGVAPCQDSDTLYL 282
+NG V +D +L L
Sbjct: 96 ELNGFNISVNVAKDWPSLPL 115
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 208 AATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNPVINGK 267
ATE +L + FS G I+EV L+++ +TKR++G A++ + E A +A+ EL N G+
Sbjct: 304 TATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSSFQGR 363
Query: 268 QCGVAPCQDSDT 279
+ P + +T
Sbjct: 364 LLHILPAKHRET 375
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 43/64 (67%)
Query: 204 GLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNPV 263
G+ ++TE L + FS+ G + +V ++M+ R KGFA++ F + E+A+KAL+EL +
Sbjct: 27 GISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQL 86
Query: 264 INGK 267
++G+
Sbjct: 87 VDGR 90
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
GGL + TE + KK F++ G+IT+V +M + +T+R +GF F+ +++ E K L + +
Sbjct: 133 GGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHE 192
Query: 263 VINGKQCGV 271
+NGK V
Sbjct: 193 -LNGKMVEV 200
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
GGL + TE + KK F++ G+IT+V +M + +T+R +GF F+ +++ E K L + +
Sbjct: 111 GGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHE 170
Query: 263 VINGKQCGV 271
+NGK V
Sbjct: 171 -LNGKMVEV 178
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
GGL + TE + KK F++ G+IT+V +M + +T+R +GF F+ +++ E K L + +
Sbjct: 111 GGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHE 170
Query: 263 VINGKQCGV 271
+NGK V
Sbjct: 171 -LNGKMVEV 178
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKAL 256
GGL + TE + KK F++ G+IT+V +M + +T+R +GF F+ +++ E K L
Sbjct: 51 GGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVL 104
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
GGL + LK+ F+ G +TE ++ + +T R++GF F+ F + A A+ E+
Sbjct: 40 GGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGK 99
Query: 263 VINGKQCGV 271
+NG+Q V
Sbjct: 100 ELNGRQIRV 108
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 203 GGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKGFAFLRFETVEQAKKALVELKNP 262
GGL + LK+ F+ G +TE ++ + +T R++GF F+ F + A A+ E+
Sbjct: 40 GGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGK 99
Query: 263 VINGKQCGV 271
+NG+Q V
Sbjct: 100 ELNGRQIRV 108