Miyakogusa Predicted Gene

Lj1g3v2898440.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2898440.1 tr|A8IMR7|A8IMR7_CHLRE Predicted protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_188842 PE=4
SV=1,34.57,3e-18,seg,NULL; Pro_isomerase,Cyclophilin-like
peptidyl-prolyl cis-trans isomerase domain;
PROKAR_LIPOPROT,CUFF.29654.1
         (338 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17070.1 | Symbols:  | peptidyl-prolyl cis-trans isomerases |...   427   e-120
AT4G33380.2 | Symbols:  | unknown protein; LOCATED IN: cellular_...    49   7e-06
AT4G33380.1 | Symbols:  | unknown protein; Has 194 Blast hits to...    49   7e-06

>AT4G17070.1 | Symbols:  | peptidyl-prolyl cis-trans isomerases |
           chr4:9595523-9598066 REVERSE LENGTH=343
          Length = 343

 Score =  427 bits (1097), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 193/336 (57%), Positives = 250/336 (74%), Gaps = 2/336 (0%)

Query: 1   MGRRQNDSDVGRFTLLILFLMGAISCSTVYLFITVIFRPSSSASVSSMQXXXXXXXXXXX 60
           M RR ND + GRFT  +L L+G ISC  VY   + + RPS   ++  +            
Sbjct: 1   MPRRLNDGEPGRFTATVLLLIGLISCVIVYAVFSSVLRPSQDPTL--VDSAVRFKEEPRD 58

Query: 61  XXXXXXXXXQCCRGVEHLELWGDAVKWGAEFKVNSSEDCCMACKKMCQGDGGPCVCNSWV 120
                     CCRG+++LELWG AVKWG +FK NSS+ CC ACK MC G+ GPC+C+SWV
Sbjct: 59  HDATEDGEGGCCRGIDNLELWGPAVKWGTDFKFNSSDGCCKACKVMCSGNDGPCLCDSWV 118

Query: 121 FCGDREACGPRFGECWLKRQKDALNPDRRDSGDKVMWTSGFVFDKGEGIVGLETDYGILR 180
           FCG++E CG +FGECWLK+QKD L PDR+  G+KVMWTSG +F +G+GIVG ET++G++ 
Sbjct: 119 FCGNKEDCGSKFGECWLKKQKDVLVPDRQGGGEKVMWTSGLIFGQGQGIVGFETEHGVIH 178

Query: 181 MKLLPECSPESVAYILELLALPHCVGCQIYRAESRGNFWDSEGNHIKKAPFGPPFALIQG 240
           +KL PEC+P SV YIL LL L HC GCQ +RAE+RG++WDSEGNH+K APFGPP+A+IQG
Sbjct: 179 VKLHPECAPHSVYYILSLLTLRHCAGCQFHRAENRGSYWDSEGNHVKNAPFGPPYAMIQG 238

Query: 241 TLESHGSIFKDIPKEHCPSIRRGSVAWVGSGPEFFISLANHKEWRNAYTVFGSVLSEDME 300
            L++ G+IF  IP EHCP+I RGSVAWVGSGPEFFISLANH EW+ +YTVFG VL EDM+
Sbjct: 239 ILQAEGNIFTPIPTEHCPTISRGSVAWVGSGPEFFISLANHHEWKQSYTVFGLVLPEDMD 298

Query: 301 ILEKIAQLPTKSEVLSNIDVSILESPLSLRFRRIYT 336
           ++E IA LPT+++V ++++VS+LE P+SL  RR+ T
Sbjct: 299 VVETIAGLPTRADVWNSVNVSVLEKPVSLTVRRMKT 334


>AT4G33380.2 | Symbols:  | unknown protein; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: pollen tube. |
           chr4:16072064-16074605 FORWARD LENGTH=326
          Length = 326

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 44/109 (40%), Gaps = 18/109 (16%)

Query: 72  CRGVEHLELWGDAVKWGAEFKVNSSEDCCMAC-KKMCQGDGGPCVCNSWVFCGDREAC-- 128
           C    H +  G AV+WG      S+ DCC AC  +  +   G   CN WV+C     C  
Sbjct: 216 CNAELHTDYGGAAVRWGLTHHKESAADCCQACLDQAKRAKPGETRCNIWVYCPSEFGCFS 275

Query: 129 ----GPRFGECWLKRQ-------KDALNPDRRDSGDK----VMWTSGFV 162
                 +  ECWLK         KD  +   R++  K    V W SG V
Sbjct: 276 PDIYEHKHQECWLKYAEKPKQNFKDRYSETYRNNHPKAPSIVPWVSGVV 324


>AT4G33380.1 | Symbols:  | unknown protein; Has 194 Blast hits to
           189 proteins in 23 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other
           Eukaryotes - 10 (source: NCBI BLink). |
           chr4:16072064-16074605 FORWARD LENGTH=328
          Length = 328

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 44/109 (40%), Gaps = 18/109 (16%)

Query: 72  CRGVEHLELWGDAVKWGAEFKVNSSEDCCMAC-KKMCQGDGGPCVCNSWVFCGDREAC-- 128
           C    H +  G AV+WG      S+ DCC AC  +  +   G   CN WV+C     C  
Sbjct: 218 CNAELHTDYGGAAVRWGLTHHKESAADCCQACLDQAKRAKPGETRCNIWVYCPSEFGCFS 277

Query: 129 ----GPRFGECWLKRQ-------KDALNPDRRDSGDK----VMWTSGFV 162
                 +  ECWLK         KD  +   R++  K    V W SG V
Sbjct: 278 PDIYEHKHQECWLKYAEKPKQNFKDRYSETYRNNHPKAPSIVPWVSGVV 326