Miyakogusa Predicted Gene

Lj1g3v2897300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2897300.1 Non Chatacterized Hit- tr|E1ZIF3|E1ZIF3_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,44.04,2e-18,DUF1279,Domain of unknown function DUF1279;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL,CUFF.29651.1
         (125 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20940.1 | Symbols:  | Protein of unknown function (DUF1279) ...   150   2e-37

>AT2G20940.1 | Symbols:  | Protein of unknown function (DUF1279) |
           chr2:9002264-9002653 REVERSE LENGTH=129
          Length = 129

 Score =  150 bits (380), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/125 (57%), Positives = 97/125 (77%), Gaps = 5/125 (4%)

Query: 5   RFRELMKKYGKVAVGVHLSVSGASITTLYVAIRNNVDVEAILEKFHLGAASPEQNP--SI 62
           R +E++KKYGKVA+GVH SVSG SI+  Y+AI+NNVDVE++LEK+ +   S ++NP  S+
Sbjct: 4   RLKEIVKKYGKVALGVHFSVSGVSISGFYIAIKNNVDVESLLEKYQIPWFSSKENPNPSL 63

Query: 63  DTVSDAP---QTKSRTAQMAASAGGAFTLAILCNKALFPVRVPLTIALTPPIARFLARRN 119
           D   +      + ++T Q+A SAGGA  LA+LCNKALFP+RVP+T+ALTPPIARFL +R 
Sbjct: 64  DLKLEEQGSVTSDNKTKQLAKSAGGALALAVLCNKALFPIRVPITMALTPPIARFLRQRK 123

Query: 120 IVKTG 124
           I+KTG
Sbjct: 124 ILKTG 128