Miyakogusa Predicted Gene

Lj1g3v2897290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2897290.1 Non Chatacterized Hit- tr|I1N439|I1N439_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.16382
PE,97.64,0,SNARE-like,Longin-like domain; Sedlin_N,Sedlin; no
description,NULL; UNCHARACTERIZED,NULL; MBP-1 INT,CUFF.29648.1
         (127 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20930.1 | Symbols:  | SNARE-like superfamily protein | chr2:...   241   9e-65
AT1G80500.1 | Symbols:  | SNARE-like superfamily protein | chr1:...    50   3e-07

>AT2G20930.1 | Symbols:  | SNARE-like superfamily protein |
           chr2:9000790-9001656 REVERSE LENGTH=140
          Length = 140

 Score =  241 bits (615), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 114/127 (89%), Positives = 121/127 (95%)

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFT+ADDALKLHHIVHCSLDV++ERVNNPKKSG  LNE FLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTDADDALKLHHIVHCSLDVIEERVNNPKKSGTTLNEAFLG 60

Query: 61  LLYPIENYKVYGYLTNTKVKFILVTTDLDVKDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYP  NYKVYGYLTNTKVKFILVTTDLDV+D DVR+FFR+FHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTVNYKVYGYLTNTKVKFILVTTDLDVRDTDVRSFFRKFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSRTYA 127
           ITSRT+A
Sbjct: 121 ITSRTFA 127


>AT1G80500.1 | Symbols:  | SNARE-like superfamily protein |
           chr1:30271195-30272431 FORWARD LENGTH=135
          Length = 135

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 15/125 (12%)

Query: 4   CVAVVGHQNNPLY---IQSFTEADDALKLHH-IVHCSLDVVDERVNNPKKSGPMLNETFL 59
           C  +VG  + P+Y   + S  + +DA +LH  I+H +LDVV +            +  FL
Sbjct: 6   CFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTT-------SAMFL 58

Query: 60  GLLYPIENYKVYGYLTNTKVKFILVTTDLDVKDAD-VRNFFRRFHAAYVDAVSNPFHVPG 118
             +    +  V  Y+T    + +L+    D ++ D +++FF+  H  Y+  + NP ++PG
Sbjct: 59  KSVDRFNDLVVSVYVTAGHTRLMLLH---DSRNEDGIKSFFQEVHELYIKILLNPLYLPG 115

Query: 119 KKITS 123
            +ITS
Sbjct: 116 SRITS 120