Miyakogusa Predicted Gene

Lj1g3v2883910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2883910.1 Non Chatacterized Hit- tr|I3T359|I3T359_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=3
SV=1,100,0,Cytochrom_C,Cytochrome c, class I; Cytochrome c,Cytochrome
c domain; CYTC,Cytochrome c domain; CYTCH,CUFF.29631.1
         (113 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10040.1 | Symbols: CYTC-2 | cytochrome c-2 | chr4:6277083-62...   216   3e-57
AT1G22840.1 | Symbols: CYTC-1, ATCYTC-A | CYTOCHROME C-1 | chr1:...   213   2e-56
AT1G22840.2 | Symbols: CYTC-1, ATCYTC-A | CYTOCHROME C-1 | chr1:...   154   9e-39

>AT4G10040.1 | Symbols: CYTC-2 | cytochrome c-2 |
           chr4:6277083-6278281 FORWARD LENGTH=112
          Length = 112

 Score =  216 bits (549), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 101/112 (90%), Positives = 108/112 (96%)

Query: 1   MATFDEAPPGDTKAGEKIFKIKCAQCHTVDQGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MA+FDEAPPG+ KAGEKIF+ KCAQCHTV++GAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 112
           NK+MAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+ TA
Sbjct: 61  NKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112


>AT1G22840.1 | Symbols: CYTC-1, ATCYTC-A | CYTOCHROME C-1 |
           chr1:8079384-8080286 FORWARD LENGTH=114
          Length = 114

 Score =  213 bits (541), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/112 (89%), Positives = 105/112 (93%)

Query: 1   MATFDEAPPGDTKAGEKIFKIKCAQCHTVDQGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MA+FDEAPPG+ KAGEKIF+ KCAQCHTV+ GAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct: 1   MASFDEAPPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 112
           NKN AV WEEK LYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct: 61  NKNKAVEWEEKALYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112


>AT1G22840.2 | Symbols: CYTC-1, ATCYTC-A | CYTOCHROME C-1 |
          chr1:8079384-8080246 FORWARD LENGTH=102
          Length = 102

 Score =  154 bits (390), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 71/84 (84%), Positives = 76/84 (90%)

Query: 1  MATFDEAPPGDTKAGEKIFKIKCAQCHTVDQGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
          MA+FDEAPPG+ KAGEKIF+ KCAQCHTV+ GAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct: 1  MASFDEAPPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60

Query: 61 NKNMAVIWEEKTLYDYLLNPKKYI 84
          NKN AV WEEK LYDYLLNPKK +
Sbjct: 61 NKNKAVEWEEKALYDYLLNPKKVL 84