Miyakogusa Predicted Gene

Lj1g3v2873800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2873800.1 tr|G7KTQ9|G7KTQ9_MEDTR ATP-dependent DNA helicase
PIF1 OS=Medicago truncatula GN=MTR_7g110080 PE=4
S,31.35,5e-19,REPLICATION FACTOR A 1, RFA1,NULL; Nucleic acid-binding
proteins,Nucleic acid-binding, OB-fold-like;,CUFF.29627.1
         (255 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A p...    82   5e-16
AT1G52950.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    76   3e-14
AT4G19130.1 | Symbols:  | Replication factor-A protein 1-related...    75   3e-14
AT2G06510.1 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | replic...    72   4e-13
AT2G06510.2 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | replic...    72   4e-13
AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    69   2e-12
AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B | ...    59   4e-09
AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A p...    54   7e-08
AT1G14800.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    49   4e-06

>AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A
           protein 1-related | chr5:18398990-18401644 FORWARD
           LENGTH=853
          Length = 853

 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 16/231 (6%)

Query: 21  WRIKVRVVRMWEMCPISEP---GKPFAVQMVLIDAEGQRIEATIIKSLIRKLFGEIVEGN 77
           W IKVRV    ++   + P   GK F+    L+DA+G  I  T     + + F +IV GN
Sbjct: 312 WTIKVRVTSKADLRRFNNPRGEGKLFSFD--LLDADGGEIRVTCFNDAVDQFFDKIVVGN 369

Query: 78  IYKITYFSVVPNLGVYKAAKHEFKIIFNSRTKIVPEESD-LIPLYGFDFMNSAEIAHTNG 136
           +Y I+  ++ P    +    ++++I  +S + I P E D  IP Y F F N  +I   N 
Sbjct: 370 VYLISRGNLKPAQKNFNHLPNDYEIHLDSASTIQPCEDDGTIPRYHFHFRNIGDIE--NM 427

Query: 137 ESENLIDVIGLVTAVSREKQYTKGANITRMIE--LQLIDDRG-IVQCTFFVSYVDVFTHH 193
           E+ +  DVIG+V+++S      +  N+T + +  LQL D  G  V+ T + ++ +     
Sbjct: 428 ENNSTTDVIGIVSSISPTVAIMR-KNLTEVQKRSLQLKDMSGRSVEVTMWGNFCNAEGQK 486

Query: 194 VQE--DRQAMPVVVVKFAKIKTFKGDFVLQNVMHATRILWNPEIPEVLAFR 242
           +Q   D    PV+ +K  +I  F G  V  + + A++    P+ PE    R
Sbjct: 487 LQNLCDSGVFPVLALKAGRIGEFNGKQV--STIGASQFFIEPDFPEARELR 535


>AT1G52950.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:19725483-19728007 FORWARD LENGTH=566
          Length = 566

 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 108/231 (46%), Gaps = 9/231 (3%)

Query: 18  RDTWRIKVRVVRMWEMCPISEPGKPFAVQMVLIDAEGQRIEATIIKSLIRKLFGEIVEGN 77
           + +W I+V+++  W        G   + +M+L D +G +I+A I K  + KL   +  G+
Sbjct: 17  KTSWCIQVKILHAWNH---YTKGSGMSYEMMLADEDGNKIQAGIKKEHLLKLQRYVKIGH 73

Query: 78  IYKITYFSVVPNLGVYKAAKHEFKIIFNSRTKI--VPEESDLIPLYGFDFMNSAEIAHTN 135
              I  FSV    G+Y++  H ++I   S T+    P  SD I L   D +N  ++    
Sbjct: 74  WTIIEEFSVTKASGLYRSTTHPYRINIQSSTRFSNSPTISDEIWL---DLVNFNDVLSGT 130

Query: 136 GESENLIDVIGLVTAVSREKQYTKGANITRMIELQLID-DRGIVQCTFFVSYVDVFTHHV 194
            +   L++VIG +  V   +        T+ I+ QL D D   + C+ +  + D      
Sbjct: 131 LDQNKLVNVIGQLVNVGEIQLLDVQGKPTKKIDFQLRDTDDNRLPCSLWGKFADQIHKVS 190

Query: 195 QEDRQAMPVVVVKFAKIKTFKGDFVLQNVMHATRILWNPEIPEVLAFRNRL 245
           +E    + + ++++AK+  +K    + N   A+ +  NP + EV  F+N L
Sbjct: 191 KESVGGIVICLIRWAKLGHYKEIRSISNAFDASEVFINPILTEVEEFKNLL 241


>AT4G19130.1 | Symbols:  | Replication factor-A protein 1-related |
           chr4:10466618-10469092 REVERSE LENGTH=784
          Length = 784

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 11/230 (4%)

Query: 21  WRIKVRVVRMWEMCPISEP-GKPFAVQMVLIDAEGQRIEATIIKSLIRKLFGEIVEGNIY 79
           W IK RV     +   S P G+       L+DA+G  I  T   ++  + + +IV GN+Y
Sbjct: 241 WTIKARVTNKAALKQYSNPRGEGKVFNFDLLDADGGEIRVTCFNAVADQFYDQIVVGNLY 300

Query: 80  KITYFSVVPNLGVYKAAKHEFKIIFNSRTKI--VPEESDLIPLYGFDFMNSAEIAHTNGE 137
            I+  S+ P    +   +++++I+ ++ + I    EE   IP + F F    +I     E
Sbjct: 301 LISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCYEEDAAIPRHQFHFRTIGDIESM--E 358

Query: 138 SENLIDVIGLVTAVSREKQYT-KGANITRMIELQLIDDRG-IVQCTFFVSYVDVFTHHVQ 195
           +  ++DVIG+V+++S     T K    T    LQL D  G  V+ T +  + +     +Q
Sbjct: 359 NNCIVDVIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEVTMWGDFCNAEGQRLQ 418

Query: 196 E--DRQAMPVVVVKFAKIKTFKGDFVLQNVMHATRILWNPEIPEVLAFRN 243
              D    PV+ VK  +I  F G  V  + + ++++  +P+  E    +N
Sbjct: 419 SLCDSGVFPVLAVKAGRISEFNGKTV--STIGSSQLFIDPDFVEAEKLKN 466


>AT2G06510.1 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A |
           replication protein A 1A | chr2:2585215-2587601 FORWARD
           LENGTH=640
          Length = 640

 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 108/232 (46%), Gaps = 17/232 (7%)

Query: 21  WRIKVRVVRMWEMCPISEP---GKPFAVQMVLIDAEGQRIEATIIKSLIRKLFGEIVEGN 77
           W IK RV    ++   +     GK F+    L+D +G  I  T   +L+ + +     G 
Sbjct: 210 WAIKARVTAKGDIRRYNNAKGDGKVFSFD--LLDYDGGEIRVTCFNALVDRFYDVTEVGK 267

Query: 78  IYKITYFSVVPNLGVYKAAKHEFKIIFNSRT--KIVPEESDLIPLYGFDFMNSAEIAHTN 135
           +Y I+  S+ P    +   K+E++I   S +  ++ P+E   IP   F F   ++I   N
Sbjct: 268 VYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPISDIE--N 325

Query: 136 GESENLIDVIGLVTAVSREKQYTK--GANITRMIELQLIDDRG-IVQCTFFVSYVDVFTH 192
            E+  ++DVIG+VT+V+      +  G    R I L L D+ G  V+ T +  + +    
Sbjct: 326 AENNTILDVIGVVTSVNPSVPILRKNGMETHRRI-LNLKDESGKAVEVTLWGEFCNRDGR 384

Query: 193 HVQE--DRQAMPVVVVKFAKIKTFKGDFVLQNVMHATRILWNPEIPEVLAFR 242
            ++E  D    PV+ +K  K+  F G  V    + +T++  NP+ PE    R
Sbjct: 385 QLEEMVDSAFHPVLAIKAGKVSDFSGKSV--GTISSTQLFINPDFPEAHKLR 434


>AT2G06510.2 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A |
           replication protein A 1A | chr2:2585215-2587601 FORWARD
           LENGTH=617
          Length = 617

 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 108/232 (46%), Gaps = 17/232 (7%)

Query: 21  WRIKVRVVRMWEMCPISEP---GKPFAVQMVLIDAEGQRIEATIIKSLIRKLFGEIVEGN 77
           W IK RV    ++   +     GK F+    L+D +G  I  T   +L+ + +     G 
Sbjct: 187 WAIKARVTAKGDIRRYNNAKGDGKVFSFD--LLDYDGGEIRVTCFNALVDRFYDVTEVGK 244

Query: 78  IYKITYFSVVPNLGVYKAAKHEFKIIFNSRT--KIVPEESDLIPLYGFDFMNSAEIAHTN 135
           +Y I+  S+ P    +   K+E++I   S +  ++ P+E   IP   F F   ++I   N
Sbjct: 245 VYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPISDIE--N 302

Query: 136 GESENLIDVIGLVTAVSREKQYTK--GANITRMIELQLIDDRG-IVQCTFFVSYVDVFTH 192
            E+  ++DVIG+VT+V+      +  G    R I L L D+ G  V+ T +  + +    
Sbjct: 303 AENNTILDVIGVVTSVNPSVPILRKNGMETHRRI-LNLKDESGKAVEVTLWGEFCNRDGR 361

Query: 193 HVQE--DRQAMPVVVVKFAKIKTFKGDFVLQNVMHATRILWNPEIPEVLAFR 242
            ++E  D    PV+ +K  K+  F G  V    + +T++  NP+ PE    R
Sbjct: 362 QLEEMVDSAFHPVLAIKAGKVSDFSGKSV--GTISSTQLFINPDFPEAHKLR 411


>AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr2:2098253-2100867 REVERSE LENGTH=532
          Length = 532

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 53/92 (57%)

Query: 20  TWRIKVRVVRMWEMCPISEPGKPFAVQMVLIDAEGQRIEATIIKSLIRKLFGEIVEGNIY 79
           T ++KVR+ R+W       P     + ++L+D +G+RI+A+I   L+ K   ++ EG+ Y
Sbjct: 17  TCKVKVRIARLWAYHKKDRPKDIMGIDLLLVDDKGERIQASIRSQLLSKFQEKLEEGDCY 76

Query: 80  KITYFSVVPNLGVYKAAKHEFKIIFNSRTKIV 111
            I  F +  N G Y+A+ H +KI F S T I+
Sbjct: 77  MIMNFEISDNGGSYRASSHPYKINFMSMTHII 108


>AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B |
           chr5:2572107-2574879 FORWARD LENGTH=604
          Length = 604

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 106/236 (44%), Gaps = 21/236 (8%)

Query: 20  TWRIKVRVVRMWEMCPISEP-GKPFAVQMVLIDAEGQRIEATIIKSLIRKLFGEIVEGNI 78
           +W IKVRV     M       G+     + L D EG +I+AT+  +  RK +     G +
Sbjct: 169 SWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEEGTQIQATMFNAAARKFYDRFEMGKV 228

Query: 79  YKITYFSVVPNLGVYKAAKHEFKIIFNSRTKI--VPEESDLIPLYGFDFMNSAEIAHTNG 136
           Y I+  S+      +K  ++++++  N  +++     E    P   F+F+   E+  T  
Sbjct: 229 YYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPETKFNFVPIDELG-TYV 287

Query: 137 ESENLIDVIGLVTAVSREKQYTKGANITRMIELQLIDDRGI-----VQCTFFVSYVDVFT 191
             ++LIDVIG+V +VS         +I R  + ++I  R I      + T  VS  +   
Sbjct: 288 NQKDLIDVIGVVQSVS------PTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLA 341

Query: 192 HHVQEDRQAM----PVVVVKFAKIKTFKGDFVLQNVMHATRILWNPEIPEVLAFRN 243
             + ++   M    PV+ +K  K+  F+G  V  + +  + ++ NP  PE    ++
Sbjct: 342 TGIGQELLDMADNHPVIAIKSLKVGAFQG--VSLSTISRSNVVINPNSPEATKLKS 395


>AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A
           protein 1-related | chr5:24549682-24552641 REVERSE
           LENGTH=629
          Length = 629

 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 25/237 (10%)

Query: 21  WRIKVRVVRMWEMCPISEP-GKPFAVQMVLIDAEGQRIEATIIKSLIRKLFGEIVEGNIY 79
           W IKVRV     M       G+     + L D EG +I+AT+     RK F     G +Y
Sbjct: 194 WTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKFFDRFQLGKVY 253

Query: 80  KITYFSVVPNLGVYKAAKHEFKIIFNSRTKIVPEESD--LIPLYGFDFMNSAEIAHTNGE 137
            I+  S+      +K  ++++++  N  +++    S+   IP   F+F+   E+     +
Sbjct: 254 YISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMFIPETKFNFVPIEELGLYVNQ 313

Query: 138 SENLIDVIGLVTAVSREKQYTKGANITRMIELQLIDDRGIV-----QCTFFVS-YVDVFT 191
            E LID+IG+V +VS         +I R  + ++I  R I      + T  VS + D+ T
Sbjct: 314 KE-LIDLIGVVQSVS------PTMSIRRRTDNEMIPKRDITLADESRKTVVVSLWNDLAT 366

Query: 192 HHVQE-----DRQAMPVVVVKFAKIKTFKGDFVLQNVMHATRILWNPEIPEVLAFRN 243
              QE     D+   PV+ +K  K+  F+G  V  + +  + ++ NPE PE    ++
Sbjct: 367 GIGQELLDMADQS--PVIAIKSLKVGDFQG--VSLSTISRSNVVINPESPEAKKLKS 419


>AT1G14800.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:5099572-5102558 FORWARD LENGTH=384
          Length = 384

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 30/196 (15%)

Query: 17  GRDTWRIKVRVVRMWEMCPISEPGKPFAVQMVLIDAEGQRIEATIIKSLIRKLFGEIVEG 76
           GR T ++  R++R W+   I + G+   + ++L+D +   I A I  +L       + EG
Sbjct: 24  GRSTQQVVGRLLRFWDARNIKKDGQFMGIVLLLLDEKCSVIHAFIPAALASHFRQVLREG 83

Query: 77  NIYKITYFSVVPNLGVYKAAKHEFKIIFNSRTKIVPEESDLIP--------LYGFDFMNS 128
            I+ ++ F V     +YK   H F + F   T I+ E SD+ P        L  FD  N 
Sbjct: 84  IIFNVSGFEVGRCTKLYKITDHPFLLRFLPATTII-EVSDVGPTIEREKFMLRNFD--NL 140

Query: 129 AEIAHTNGESENLIDVIGLVTAVSREKQYTKGANIT------RMIELQLIDDRGIVQCTF 182
             +A+TN      I++ G +T       + +G+N+       R++    ID   IV  + 
Sbjct: 141 QALANTN------IELPGQIT-------FVQGSNLNDPTSTQRLVLRYRIDSSVIVYLSL 187

Query: 183 FVSYVDVFTHHVQEDR 198
           +      F  H+   R
Sbjct: 188 WDDVAATFRAHLSSGR 203