Miyakogusa Predicted Gene

Lj1g3v2862750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2862750.1 tr|Q9FG25|Q9FG25_ARATH Mitochondrial
transcription termination factor family protein OS=Arabidopsis
,23.23,3e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
mTERF,Mitochodrial transcription termination factor,CUFF.29614.1
         (471 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60400.1 | Symbols:  | Mitochondrial transcription terminatio...   435   e-122
AT4G19650.1 | Symbols:  | Mitochondrial transcription terminatio...   111   1e-24
AT5G06810.1 | Symbols:  | Mitochondrial transcription terminatio...   102   5e-22
AT5G45113.1 | Symbols:  | mitochondrial transcription terminatio...    52   6e-07

>AT3G60400.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr3:22329093-22330769 FORWARD
           LENGTH=558
          Length = 558

 Score =  435 bits (1118), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/463 (48%), Positives = 304/463 (65%), Gaps = 3/463 (0%)

Query: 6   LSFFSLYRHFS-ISTILRKIPIRHRNLAVHEAQKALTDYLHATRSFPFTYAELIGNNTLC 64
           L F S+  +FS ++   R++P ++++LA+ +AQ+A+TDYLH TRS  +T+AE I +N   
Sbjct: 6   LKFASISHNFSTVAAKHRRVPSKYKSLAIGKAQQAITDYLHTTRSLSYTHAEQIASNASV 65

Query: 65  SLSNLIAKVEFSPSTFSKSFQRVLRYHPINEFEVFFESIGIEHHLVSGLLPDDKVFFSQD 124
           S+ NLI K++FS  TFSKS ++ L YHPINEFE FFESIGI++  VS  LP+ K FFS+D
Sbjct: 66  SIRNLILKLDFSVPTFSKSLRKHLSYHPINEFEFFFESIGIDYSEVSEFLPEKKFFFSED 125

Query: 125 RSLFDAACALSDFGFPWEKLGVLYLQESSIFGRSAAELKSRLGELKGFGFGNVEVIGMCL 184
           R++ DAA ALS FGFPW KLG LY +E  +F +   E++SRL + K  GF  V VIG CL
Sbjct: 126 RTVLDAAFALSGFGFPWNKLGKLYKEERLVFVQRPGEIESRLLKFKDIGFSTVAVIGTCL 185

Query: 185 AFPFVLSEESQEGVGIDELFSDLKLIFLDFGLGRFVEGDVDSWHEVCRKLRLFIDLIGYK 244
           A P  L    + G  I  LF  LK +F +F      E +VDSW  V RK+R+F DL    
Sbjct: 186 AIPRTLCGGGELGSEIRCLFVKLKRLFDEFDSHHLFEENVDSWLAVSRKIRIFYDLGCEN 245

Query: 245 GNLWEYIGRNKYKSIFIEYREEELVNKVKFFCRFGVKKEEVAQXXXXXXXXXXXXXENPV 304
             +WE + RN  KS+F+EY EE L+NK  +FCRFGV KE+ A              E PV
Sbjct: 246 EEMWELMCRN--KSLFLEYSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPV 303

Query: 305 INVLKLLKHFGLSSKDLDEISQKFAHVLGRNKLVNLPNVMRALGLQEWFFDKINGGHHQL 364
           I+V  +LKHFGL   ++D ++QK+ +V GRN+L NLP V+RA+ L E  FD +  G+H L
Sbjct: 304 ISVTGMLKHFGLRQDEVDAVAQKYPYVFGRNQLKNLPYVLRAIDLHERIFDILKNGNHHL 363

Query: 365 LTDYIAKYPNEDQDKDYQDGLRRIQISRARVHSISKLKFLHGLGFGENALTIDVLNHLHG 424
           L  Y    P+ED +++YQ+GL  +Q SR + H+I KL FLH +GFGEN +T+ VL H+HG
Sbjct: 364 LASYTLMDPDEDLEREYQEGLEELQNSRTKRHNIQKLDFLHEIGFGENGITMKVLQHVHG 423

Query: 425 TSSELQERFDCLLCSRIEFSKLCMMVRRTPRILNQNSETIKRK 467
           T+ EL +RF  LL S I FSK+CM++R  P+ILNQ   +I+ K
Sbjct: 424 TAVELHDRFQILLNSGIIFSKICMLIRSAPKILNQKPHSIQDK 466


>AT4G19650.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr4:10691674-10695166 FORWARD
           LENGTH=575
          Length = 575

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 183/419 (43%), Gaps = 25/419 (5%)

Query: 56  ELIGNNTLCSLSNLIAKVEFSPSTFSKSFQRVLRYHPINEFEVFFESIGIEHHLVSGLLP 115
           E I  N+ C +S L++K++ +    SK   + LRY+PINEFE FFES+G+  +     LP
Sbjct: 90  EHISKNSPCFMSTLLSKIDDNQKDVSKGLTKFLRYNPINEFEPFFESLGLCPYEFETFLP 149

Query: 116 DDKVFFSQDRSLFDAACALSDFGFPWEKLGVLYLQESSIFGRSAAELKSRLGELKGFGFG 175
              +F S D  +F+   AL ++G P  K+G +Y +   IF   +  L  +L   +  G  
Sbjct: 150 RKLMFLSDDGIMFENFHALCNYGIPRGKIGRMYKEAREIFRYESGMLAMKLRGYENLGLS 209

Query: 176 NVEVIGMCLAFPFVLSEESQEGVGIDELFSDL--KLIFLDFG---LGRFV-EGDVDSWHE 229
              VI +  + P +L        GID  FS +  KL  L  G   LGR++ +    SW  
Sbjct: 210 KATVIKLVTSCPLLLVG------GIDAEFSSVVDKLKGLQVGCDWLGRYLSDRKTYSWRR 263

Query: 230 VCRKLRLFIDLIGYKGNLWEYIGRNKYKSIFIEYREEELVNKVKFFCRFGVKKEEVAQXX 289
           +   +  F+D +G K      + +  Y ++ IE   ++         + G++  E+ +  
Sbjct: 264 ILETIE-FLDKVGCKEEKLSSLLKT-YPALVIEGSGKKFYVLFGRLFKAGLQVNEIYRLF 321

Query: 290 XXXXXXXXXXXENPVINVLKLLKHFGLSSKDLDEISQKFAHVLGRNKLVNLPNVMRALGL 349
                         +   L  L    + ++ + +I      ++G   L        +L +
Sbjct: 322 IDNPEMLSDKCVKNIQKTLDFLIAIRMETQFITKILLSHMELIGSCSLPAPRTACLSLNV 381

Query: 350 QEWFFDKINGGHHQLLTDYIAKYPNEDQDKDYQDGLRRIQISRARVHSISKLKFLHGLGF 409
           ++    KI       L  +++           +D  + ++          K +FL  LG+
Sbjct: 382 KQDELCKILKKEPLRLFCFVSTTKKRKSKPLSEDSRKYLE----------KTEFLLRLGY 431

Query: 410 GENA-LTIDVLNHLHGTSSELQERFDCLLCSRIEFSKLCMMVRRTPRILNQNSETIKRK 467
            EN+   +  L    G   +LQERFDCL+ + + ++ +  ++R  P ILN + + I++K
Sbjct: 432 VENSDEMVKALKQFRGRGDQLQERFDCLVKAGLNYNVVTEIIRHAPMILNLSKDVIEKK 490


>AT5G06810.1 | Symbols:  | Mitochondrial transcription termination
            factor family protein | chr5:2108493-2112256 FORWARD
            LENGTH=1141
          Length = 1141

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 128/486 (26%), Positives = 210/486 (43%), Gaps = 43/486 (8%)

Query: 3    SKTLSFFSLYRHFSISTIL-RKIPIRHRNLAVHEAQKALTDYLHATRSFPFTYAELIGNN 61
            S+   FF+  R    + +   K  +R RN     AQ A+ DY + TR   F  AE +  N
Sbjct: 592  SRNPRFFATQRALVDAEVSGEKWGLRTRNEIRKVAQVAMFDYFYQTRGLQFLVAESMSKN 651

Query: 62   TLCSLSNLIAKVE------FSPSTFSKSFQRVLRYHPINEFEVFFESIGIEHHLVSGLLP 115
                  NL+ K+              K+  R L +HP+NEFE F ES+G++    S L+P
Sbjct: 652  APVFNDNLLKKLNGCDVDVDDDDDIVKAITRFLWFHPVNEFEPFLESLGLKPSEFSHLIP 711

Query: 116  DDKVFFSQDRSLFDAACALSDFGFPWEKLGVLYLQESSIFGRSAAELKSRLGELKGFGFG 175
             DK+F ++D  L +      ++G   EK+G ++ +   +FG     L S++   +  GF 
Sbjct: 712  CDKMFLNEDAFLLENYHVFWNYGIGREKMGKIFKEAREVFGYETGVLASKIKSYEDLGFS 771

Query: 176  NVEVIGMCLAFPFVLSEESQEGVGIDELFSDLKLIFLDFGLGRFVEGDVD----SWHEVC 231
             + +  + +  P +L  +    VG+ ++   LK I   FG+    E   +     W  + 
Sbjct: 772  KLFLSKLIVCSPSILIGDM--NVGLAKVMEMLKAI--GFGVDWVTENLSEEVSYDWSSMH 827

Query: 232  RKLRLFIDLIGYKGNLWEYIGRNKYKSIFIEYREEELVNKVKFFCRFGVKKEEVAQXXXX 291
            R L    DL   +  L E I R   + IF +  E  L+    F  + G  + E++     
Sbjct: 828  RCLSFLRDLYVDENELCELI-RKMPRLIFEDSGEWTLI-LAGFEAKLGSSRSELSSLFQK 885

Query: 292  XXXXXXXXXENPVINVLKLLKHFGLSSKDL----DEISQKFAHVLGRNKLVNLPNVMRAL 347
                        V+N    L+H  L  KD+    DEI + F       +L +L   +  L
Sbjct: 886  FPQCQSLG--KFVLN----LRHCFLFLKDIEMDDDEIGKIF-------RLHSLWIGVSRL 932

Query: 348  GLQEWFFDKINGGHHQLLTDYIAKYPNEDQDKDYQDGLR--RIQISRARVHSIS---KLK 402
                     + GG  + L   I + P E   K +  GLR   +  +  +V++ S   K +
Sbjct: 933  KQTSTLLINLKGGKGR-LCQVIQENPEE--MKKWIMGLRVQPLPATGYKVNTKSKTMKTQ 989

Query: 403  FLHGLGFGENALTID-VLNHLHGTSSELQERFDCLLCSRIEFSKLCMMVRRTPRILNQNS 461
            FL  LG+ EN+  ++  L +  G  SEL+ERF+ L+   +    +  MV+  P IL Q  
Sbjct: 990  FLLDLGYKENSEEMERALKNFRGKGSELRERFNVLVSFGLTEKDVKDMVKACPSILTQAC 1049

Query: 462  ETIKRK 467
            + ++ K
Sbjct: 1050 DILESK 1055



 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/436 (22%), Positives = 190/436 (43%), Gaps = 19/436 (4%)

Query: 36  AQKALTDYLHATRSFPFTYAELIGNNTLCSLSNLIAKVE-FSPSTFSKSFQRVLRYHPIN 94
           A++A+ DY ++TR   +  AE +  N+   + NL+ KV+  + S  ++S  R LR+HP+N
Sbjct: 78  AEEAMLDYFYSTRGLQYMVAESMSKNSPIFIDNLLKKVDCVTASDINQSITRYLRFHPVN 137

Query: 95  EFEVFFESIGIEHHLVSGLLPDDKVFFSQDRSLFDAACALSDFGFPWEKLGVLYLQESSI 154
           EFE F ES G+     + L+P DKVF  ++  L +    L   G   +++G ++ +   +
Sbjct: 138 EFEPFLESSGLNPSEYNHLVPCDKVFLDEEGFLLENHHVLCYSGVDPKRIGKIFKEAREV 197

Query: 155 FGRSAAELKSRLGELKGFGFGNVEVIGMCLAFPFVLSEESQEGVGIDELFSDLKLIFLDF 214
           F      L S++   +  GF  + +  + +  P VL       + + ++   L+ +  +F
Sbjct: 198 FSYETGVLASKIKAYEDLGFSRLFLSKLIVCSPRVLM--GHTNIELVQVVKTLQSLGFEF 255

Query: 215 -GLGRFVEGDVDSWHEVCRKLRLFIDLIGYKGNLWEYIGRNKYKSIFIEYREEELVNKVK 273
             +   +  +   W  V R L L  ++   +  L+  I RN   S+  E   +     V 
Sbjct: 256 EWVMENLSDEGPDWSSVHRVLSLLREICFDEEKLYGLI-RN-CPSLLFENSGKWTGILVG 313

Query: 274 FFCRFGVKKEEVAQXXXXXXXXXXXXXENPVINVLKLLKHFGLSSKDLDEISQKFAHVLG 333
           F  + G  + E+                + +      LK   +   ++ ++ +  +  LG
Sbjct: 314 FETKLGASRSELCSLFQKFPLIQVEKCVSNLRQCFLFLKEIEMEDDEIHKVFRSHSWWLG 373

Query: 334 RNKLVNLPNVMRALGLQEWFFDKINGGHHQLLTDYIAKYPNEDQDKDYQDGLRRIQISRA 393
             KL    +++  L            G  + +   I + P E +       ++ +  +  
Sbjct: 374 SCKLKKTSSLLVFL----------KAGKTR-VCQVIQENPEEMKKWTMGSKIQPLPATNV 422

Query: 394 RVHSIS-KLKFLHGLGFGENALTIDV-LNHLHGTSSELQERFDCLLCSRIEFSKLCMMVR 451
            + S S K +FL  LG+ EN+  ++  + +  G  SEL+ERF+ L+        +  MV+
Sbjct: 423 DIESKSMKTQFLLDLGYKENSEEMETAMKNFRGKGSELRERFNVLVSLGFTKKDVKDMVK 482

Query: 452 RTPRILNQNSETIKRK 467
             P +L+Q  + ++ K
Sbjct: 483 ACPTMLSQTCDILESK 498


>AT5G45113.1 | Symbols:  | mitochondrial transcription termination
           factor-related / mTERF-related | chr5:18232277-18233521
           REVERSE LENGTH=414
          Length = 414

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 141/357 (39%), Gaps = 44/357 (12%)

Query: 127 LFDAACALSDFGFPWEKLGVLYLQESSIFGRSAAELKSRLGELKGFGFGNVEVIGMCLAF 186
           +F+    L  +G P +K+G LY +   IF      L S+L   +        VI +    
Sbjct: 1   MFENFHVLCYYGIPRDKIGRLYKEAREIFVYENGVLASKLEPYEILVLRKAIVIKLVTCC 60

Query: 187 PFVLSEESQEGVGIDELFSDL--KLIFLDFG---LGRFVE-GDVDSWHEVCRKLRLFIDL 240
           P +L        GID  F  +  KL  L+ G   L R++      +W  +   + L ++ 
Sbjct: 61  PLLLVG------GIDCEFVSVVNKLKGLNLGCDWLARYLSVRKTYNWRRILETMEL-LEK 113

Query: 241 IGYK----GNLW----EYIGRNKYKSIFIEYREEELVNKVKFFCRFGVKKEEVAQXXXXX 292
           +G+K     NL     + +G       +I + +         F + G++  E+ +     
Sbjct: 114 VGFKEKKLSNLLKAYPDLVGETSGNKAYIMFEK---------FHKVGLQMNEIDKLLIDN 164

Query: 293 XXXXXXXXENPVINVLKLLKHFGLSSKDLDEISQ-KFAHVLGRNKLVNLPNVMRALGLQE 351
                      ++  LK LK   +  + +    Q    H+   + LV      RA+    
Sbjct: 165 SEMLLEKSVKRILEALKFLKCIRIEKQFVVRFLQCHMKHICSSSLLVP-----RAV---- 215

Query: 352 WFFDKINGGHHQLLTDYIAKYPNEDQDKDYQDGLRRIQISRARVHSISKLKFLHGLGFGE 411
           W   KI       L   I + P        +    RI++      +  K  FL  LG+ E
Sbjct: 216 WNRLKIRRDE---LCQIIKEEPLRLFSIASKTNKGRIELDSLDSRNAEKTTFLLKLGYVE 272

Query: 412 NA-LTIDVLNHLHGTSSELQERFDCLLCSRIEFSKLCMMVRRTPRILNQNSETIKRK 467
           N+   +  L    G   ELQERFDC + + ++++ +  +V+R P ILN+  + I++K
Sbjct: 273 NSDEMVRALKKFQGRGDELQERFDCFVKAGLDYNVVSQLVKRAPHILNRPKDIIEKK 329