Miyakogusa Predicted Gene

Lj1g3v2862520.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2862520.2 tr|F4J9G6|F4J9G6_ARATH LETM1-like protein
OS=Arabidopsis thaliana GN=At3g59820 PE=4
SV=1,70.31,7e-18,EF-hand,NULL; EF_HAND_2,EF-HAND 2; no
description,EF-hand-like domain,CUFF.29621.2
         (90 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65540.1 | Symbols:  | LETM1-like protein | chr1:24362382-243...   129   3e-31
AT3G59820.1 | Symbols:  | LETM1-like protein | chr3:22098306-221...   113   3e-26
AT3G59820.2 | Symbols:  | LETM1-like protein | chr3:22098289-221...    92   5e-20

>AT1G65540.1 | Symbols:  | LETM1-like protein |
           chr1:24362382-24366011 REVERSE LENGTH=736
          Length = 736

 Score =  129 bits (325), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 68/76 (89%)

Query: 1   MLHTLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVQSAAMYLKDTLGKEGIQELISNLS 60
           ML  LEKEIDDVD KIG+RWRLLDRDYDGKV+P+EV  AAMYLKDTLGKEGIQELI NLS
Sbjct: 643 MLQKLEKEIDDVDNKIGNRWRLLDRDYDGKVSPDEVALAAMYLKDTLGKEGIQELIQNLS 702

Query: 61  KDSDGKILVEDIVRLG 76
           KD DGKILVED+V+L 
Sbjct: 703 KDKDGKILVEDLVKLA 718


>AT3G59820.1 | Symbols:  | LETM1-like protein |
           chr3:22098306-22101759 REVERSE LENGTH=755
          Length = 755

 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 66/76 (86%)

Query: 1   MLHTLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVQSAAMYLKDTLGKEGIQELISNLS 60
           ++  LEKEIDDVD KIG  W+LLDRD DGKVTP+EV +AAMYLKDTL  +G+Q+LIS+LS
Sbjct: 664 LIQNLEKEIDDVDIKIGKGWQLLDRDRDGKVTPDEVAAAAMYLKDTLANDGLQQLISSLS 723

Query: 61  KDSDGKILVEDIVRLG 76
           KD +G+I+VEDIVRLG
Sbjct: 724 KDKEGRIMVEDIVRLG 739


>AT3G59820.2 | Symbols:  | LETM1-like protein |
           chr3:22098289-22101759 REVERSE LENGTH=760
          Length = 760

 Score = 92.4 bits (228), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 53/62 (85%)

Query: 1   MLHTLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVQSAAMYLKDTLGKEGIQELISNLS 60
           ++  LEKEIDDVD KIG  W+LLDRD DGKVTP+EV +AAMYLKDTL  +G+Q+LIS+LS
Sbjct: 664 LIQNLEKEIDDVDIKIGKGWQLLDRDRDGKVTPDEVAAAAMYLKDTLANDGLQQLISSLS 723

Query: 61  KD 62
           KD
Sbjct: 724 KD 725