Miyakogusa Predicted Gene

Lj1g3v2862520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2862520.1 tr|F4J9G6|F4J9G6_ARATH LETM1-like protein
OS=Arabidopsis thaliana GN=At3g59820 PE=4 SV=1,70.31,4e-18,no
description,EF-hand-like domain; seg,NULL; EF-hand,NULL;
EF_HAND_2,EF-HAND 2,CUFF.29621.1
         (111 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65540.1 | Symbols:  | LETM1-like protein | chr1:24362382-243...   131   1e-31
AT3G59820.1 | Symbols:  | LETM1-like protein | chr3:22098306-221...   114   1e-26
AT3G59820.2 | Symbols:  | LETM1-like protein | chr3:22098289-221...    93   4e-20

>AT1G65540.1 | Symbols:  | LETM1-like protein |
           chr1:24362382-24366011 REVERSE LENGTH=736
          Length = 736

 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 68/76 (89%)

Query: 1   MLHTLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVQSAAMYLKDTLGKEGIQELISNLS 60
           ML  LEKEIDDVD KIG+RWRLLDRDYDGKV+P+EV  AAMYLKDTLGKEGIQELI NLS
Sbjct: 643 MLQKLEKEIDDVDNKIGNRWRLLDRDYDGKVSPDEVALAAMYLKDTLGKEGIQELIQNLS 702

Query: 61  KDSDGKILVEDIVRLG 76
           KD DGKILVED+V+L 
Sbjct: 703 KDKDGKILVEDLVKLA 718


>AT3G59820.1 | Symbols:  | LETM1-like protein |
           chr3:22098306-22101759 REVERSE LENGTH=755
          Length = 755

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%), Gaps = 4/92 (4%)

Query: 1   MLHTLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVQSAAMYLKDTLGKEGIQELISNLS 60
           ++  LEKEIDDVD KIG  W+LLDRD DGKVTP+EV +AAMYLKDTL  +G+Q+LIS+LS
Sbjct: 664 LIQNLEKEIDDVDIKIGKGWQLLDRDRDGKVTPDEVAAAAMYLKDTLANDGLQQLISSLS 723

Query: 61  KDSDGKILVEDIVRLG----IQKEDADAEECS 88
           KD +G+I+VEDIVRLG      +E+A  EE S
Sbjct: 724 KDKEGRIMVEDIVRLGRLGSKPEENATEEESS 755


>AT3G59820.2 | Symbols:  | LETM1-like protein |
           chr3:22098289-22101759 REVERSE LENGTH=760
          Length = 760

 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 53/62 (85%)

Query: 1   MLHTLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVQSAAMYLKDTLGKEGIQELISNLS 60
           ++  LEKEIDDVD KIG  W+LLDRD DGKVTP+EV +AAMYLKDTL  +G+Q+LIS+LS
Sbjct: 664 LIQNLEKEIDDVDIKIGKGWQLLDRDRDGKVTPDEVAAAAMYLKDTLANDGLQQLISSLS 723

Query: 61  KD 62
           KD
Sbjct: 724 KD 725