Miyakogusa Predicted Gene

Lj1g3v2842390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2842390.1 Non Chatacterized Hit- tr|I1L673|I1L673_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.52547 PE,53.7,0,COHESIN
SUBUNIT RAD21,NULL; SCC1 / RAD21 FAMILY MEMBER,NULL; no
description,Rad21/Rec8-like protein,,CUFF.29694.1
         (1276 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16270.1 | Symbols: ATRAD21.3, SYN4 | sister chromatid cohesi...   368   e-101
AT3G59550.1 | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like...   155   1e-37
AT5G40840.2 | Symbols: SYN2 | Rad21/Rec8-like family protein | c...   125   3e-28
AT5G40840.1 | Symbols: SYN2, AtRAD21.1 | Rad21/Rec8-like family ...   125   3e-28
AT5G05490.2 | Symbols: SYN1, DIF1 | Rad21/Rec8-like family prote...   108   2e-23
AT5G05490.1 | Symbols: SYN1, ATREC8, REC8 | Rad21/Rec8-like fami...   100   7e-21
AT5G40840.3 | Symbols: SYN2 | Rad21/Rec8-like family protein | c...    71   5e-12

>AT5G16270.1 | Symbols: ATRAD21.3, SYN4 | sister chromatid cohesion
           1 protein 4 | chr5:5316783-5322330 FORWARD LENGTH=1031
          Length = 1031

 Score =  368 bits (945), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/353 (58%), Positives = 236/353 (66%), Gaps = 32/353 (9%)

Query: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
           MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFP+ PIALRLSSHLL
Sbjct: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60

Query: 61  LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
           LGVVRIYSRKVNYLFDDCSEALLKVKQAFRS AVDLPPEESTAPYHSITLPETFDLDDFE
Sbjct: 61  LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDFE 120

Query: 121 LPDNDISQGNYVDHHVSSREQITLQDNMEGVVYTASQFGLDERFGDGDASQIGFDLDEVL 180
           LPDN+I QGNYVDHHVS++EQITLQD M+GVVY+ SQFGLDERFGDGD SQ   DLDE +
Sbjct: 121 LPDNEIFQGNYVDHHVSTKEQITLQDTMDGVVYSTSQFGLDERFGDGDTSQAALDLDEAV 180

Query: 181 LGDK---------AAAMDHDGL--SANPDASHKNDDNNEELRGTSDRMQVEDSGSKNDLI 229
             DK            +DH+    +A P      +  +E +    +  QVED    N+ I
Sbjct: 181 FQDKDVIGSDDEGVPGIDHNAYLDAAAPGIKDSMEGVSEAMPMDFNEEQVEDLAMNNEFI 240

Query: 230 DGQPSLAEVSEYAQGPSTPGLQE-PNLFGTQVDQVNDEADCNNSADLVTMKIEQ-----K 283
                     E AQ P TPGL E PN        V ++  C++  D+  +  E+      
Sbjct: 241 ----------EDAQAPQTPGLVEVPN-----SSSVREQMACDDHMDVEDLNAEEGIKSSG 285

Query: 284 ESSAHQMENDVVDCSTQNNGEHVGVDLHHGDSDCIMVEVDSKREDKEHMASKV 336
           E +A++M     D S++ N     V     D   I   V+++ E +E  A  V
Sbjct: 286 ELNANEMPKRGEDLSSEYNAPESAVTPVEVDKSQIDENVNTQNEPEEERAEHV 338



 Score =  200 bits (508), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 114/225 (50%), Positives = 147/225 (65%), Gaps = 4/225 (1%)

Query: 574 SVHKEKPDLGESGKSAASDMPEPEKMLSLAYQHDGEANNLVLESTPVNQSISEGHTDAAG 633
           + H+    LG       SD P PEK+L++  +  G+ N+ ++ESTP  +     + DA G
Sbjct: 418 NAHETDEQLGNLTGFTDSDFPPPEKVLAVPNRQ-GDGNDFMVESTPDKEDPGTCNDDA-G 475

Query: 634 VTCISGKKRSFTESTLTMQSVDLVESYGGAQSKRTAEXXXXXXXXXXXXXAGKRSSVLKI 693
              I+GKKR+FTESTLT +S++ VES G  QSKRTA+              GK SS LK+
Sbjct: 476 NNNITGKKRTFTESTLTAESLNSVESVGLIQSKRTADSVPDDDDLLSSILVGK-SSFLKM 534

Query: 694 KPSPAAPEIASTKRFRSGSRSSAIKRKVLMDDVMVLHGDTIRQQLTSTEDIRRVRKKAPC 753
           +P+P   E A+TKR RS  RS+A KRKVLMDD MVLHGD IRQQLT+TEDIRRVRKKAPC
Sbjct: 535 RPTPVL-EPATTKRLRSAPRSTATKRKVLMDDPMVLHGDIIRQQLTNTEDIRRVRKKAPC 593

Query: 754 TRHEILMIQRQFLEDEIFHEPILTDLSSDLTVLRSDTFDLTRIKV 798
           T  EI+M+QRQ LED +F EPI T +S +L  L ++ +DL  I +
Sbjct: 594 TVPEIVMLQRQALEDGLFKEPIFTGMSVELVSLHTEPYDLRGIMI 638



 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/148 (53%), Positives = 96/148 (64%), Gaps = 1/148 (0%)

Query: 1130 QEVALQSTMCPEASAVQSPFVDQKDDDDMV-ANDTGFLNVGXXXXXXXXXXXXFMPAAEG 1188
            +E ++Q+ +  E ++      D  + D M  A+DTGFLNV                  E 
Sbjct: 884  EEASMQNALDGEHTSRDGLMGDNDEMDTMENAHDTGFLNVDDDEVDEDHEEDDIQYDDET 943

Query: 1189 THLENSGWSSRTRAVAKYLQTSFDKEDRQGRKNLKLDNILAGKTRKEASRMFFETLVLKT 1248
              LENSGWSSRTRAVAKYLQT FDKE   G+  L  D +LAGKTRKEASRMFFETLVLKT
Sbjct: 944  RLLENSGWSSRTRAVAKYLQTLFDKETENGKNVLVADKLLAGKTRKEASRMFFETLVLKT 1003

Query: 1249 RDYVHVEQAEPYDNIDLKPRPKLMKADF 1276
            RDY+ VEQ +PY++I +KPRPKL K+ F
Sbjct: 1004 RDYIQVEQGKPYESIIIKPRPKLTKSIF 1031


>AT3G59550.1 | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like
           family protein | chr3:21997262-22000496 FORWARD
           LENGTH=693
          Length = 693

 Score =  155 bits (393), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 111/163 (68%), Gaps = 4/163 (2%)

Query: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
           MFYS  +LA+KGPLGT+W AAH+ ++L+K+Q    +I  +VD+I+FP+VP+ALR SSHLL
Sbjct: 1   MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60

Query: 61  LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
           +GVVRIYS+KV+YL++D +     V +AF ST V+LP +   AP  S+TLP+  +LD+F+
Sbjct: 61  VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFD 120

Query: 121 LPDNDISQGNYVDHHVSSREQITLQDNMEGVV--YTASQFGLD 161
           L D+ +      D+H  S E ITL D +   +  Y A  F  D
Sbjct: 121 LEDDTLDME--FDNHTRSEEDITLTDQIPTGIDPYVAVTFDED 161



 Score = 67.0 bits (162), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 1184 PAAEGTHLENSGWSSRTRAVAKYLQTSFDKEDRQGRK---NLKLDNILAGKTRKEASRMF 1240
            P       +++  + R RA+A+YL+               +L L  ILAGKTRK A+RMF
Sbjct: 597  PVGTPASQDSAALTGRARALAQYLKQRSSSSPTTSSHPSGDLSLSEILAGKTRKLAARMF 656

Query: 1241 FETLVLKTRDYVHVEQAEPYDNIDLKPRPKLM 1272
            FETLVLK+R  + ++Q  PY +I LK  P L 
Sbjct: 657  FETLVLKSRGLIDMQQDRPYGDIALKLMPALF 688


>AT5G40840.2 | Symbols: SYN2 | Rad21/Rec8-like family protein |
           chr5:16359611-16363722 REVERSE LENGTH=810
          Length = 810

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 106/173 (61%), Gaps = 18/173 (10%)

Query: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDV-PIALRLSSHL 59
           MFYS  ++++KGPLG IW+AA+  +KL+K+QV  T I  SVD IL  ++  +  R+ ++L
Sbjct: 1   MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60

Query: 60  LLGVVRIYSRKVNYLFDDCSEALLKVKQAF------RSTAVDLPPEESTAPYHSITLPET 113
           LLGVVRIYS+KV++LFDDC++AL+ VK+          T V LP   ++    SI LPE 
Sbjct: 61  LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLP---ASIECFSIALPER 117

Query: 114 FDLDDFELPDNDISQGNYVDHHVSSREQITLQDNMEGV----VYTASQFGLDE 162
           F+LD F+L   +   G  V  H    E ITL+D  +      +Y+  +F ++E
Sbjct: 118 FELDAFDLGVLEDFHGGNVKPH----EDITLKDGSQETERMDMYSMERFDMEE 166



 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 57/82 (69%), Gaps = 1/82 (1%)

Query: 1185 AAEGTHLENSGWSSRTRAVAKYLQTSF-DKEDRQGRKNLKLDNILAGKTRKEASRMFFET 1243
            A E   L+   WSSRTR VAK+L+ +F ++ +R+  + + L  +  G+T+KE++R+F+ET
Sbjct: 719  ADERQDLQQETWSSRTRNVAKFLEKTFLEQREREEEEKVSLLQLCRGRTQKESARLFYET 778

Query: 1244 LVLKTRDYVHVEQAEPYDNIDL 1265
            LVLKT+ YV V+Q  PY ++ L
Sbjct: 779  LVLKTKGYVEVKQNHPYSDVFL 800


>AT5G40840.1 | Symbols: SYN2, AtRAD21.1 | Rad21/Rec8-like family
           protein | chr5:16359611-16363722 REVERSE LENGTH=809
          Length = 809

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 106/173 (61%), Gaps = 18/173 (10%)

Query: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDV-PIALRLSSHL 59
           MFYS  ++++KGPLG IW+AA+  +KL+K+QV  T I  SVD IL  ++  +  R+ ++L
Sbjct: 1   MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60

Query: 60  LLGVVRIYSRKVNYLFDDCSEALLKVKQAF------RSTAVDLPPEESTAPYHSITLPET 113
           LLGVVRIYS+KV++LFDDC++AL+ VK+          T V LP   ++    SI LPE 
Sbjct: 61  LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLP---ASIECFSIALPER 117

Query: 114 FDLDDFELPDNDISQGNYVDHHVSSREQITLQDNMEGV----VYTASQFGLDE 162
           F+LD F+L   +   G  V  H    E ITL+D  +      +Y+  +F ++E
Sbjct: 118 FELDAFDLGVLEDFHGGNVKPH----EDITLKDGSQETERMDMYSMERFDMEE 166



 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 57/82 (69%), Gaps = 1/82 (1%)

Query: 1185 AAEGTHLENSGWSSRTRAVAKYLQTSF-DKEDRQGRKNLKLDNILAGKTRKEASRMFFET 1243
            A E   L+   WSSRTR VAK+L+ +F ++ +R+  + + L  +  G+T+KE++R+F+ET
Sbjct: 718  ADERQDLQQETWSSRTRNVAKFLEKTFLEQREREEEEKVSLLQLCRGRTQKESARLFYET 777

Query: 1244 LVLKTRDYVHVEQAEPYDNIDL 1265
            LVLKT+ YV V+Q  PY ++ L
Sbjct: 778  LVLKTKGYVEVKQNHPYSDVFL 799


>AT5G05490.2 | Symbols: SYN1, DIF1 | Rad21/Rec8-like family protein
           | chr5:1624712-1629144 FORWARD LENGTH=617
          Length = 617

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 83/139 (59%), Gaps = 6/139 (4%)

Query: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
           MFYS  +LA+K PLG IW+AA L  K+ + ++   DI    + IL P VP+ALRLS  L+
Sbjct: 1   MFYSHQLLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILM 60

Query: 61  LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSTAVD----LPPEESTAPYHSITLPET--F 114
            GVV +Y RKV  LFDD +  L+++  A+R+ +V     LP  ++ A   ++TLPE    
Sbjct: 61  GGVVIVYERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEA 120

Query: 115 DLDDFELPDNDISQGNYVD 133
           D  DFE   N    GNY+D
Sbjct: 121 DFGDFEQTRNVPKFGNYMD 139


>AT5G05490.1 | Symbols: SYN1, ATREC8, REC8 | Rad21/Rec8-like family
           protein | chr5:1624325-1629144 FORWARD LENGTH=627
          Length = 627

 Score =  100 bits (249), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 79/133 (59%), Gaps = 6/133 (4%)

Query: 7   ILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRI 66
           +LA+K PLG IW+AA L  K+ + ++   DI    + IL P VP+ALRLS  L+ GVV +
Sbjct: 17  LLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVIV 76

Query: 67  YSRKVNYLFDDCSEALLKVKQAFRSTAVD----LPPEESTAPYHSITLPET--FDLDDFE 120
           Y RKV  LFDD +  L+++  A+R+ +V     LP  ++ A   ++TLPE    D  DFE
Sbjct: 77  YERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGDFE 136

Query: 121 LPDNDISQGNYVD 133
              N    GNY+D
Sbjct: 137 QTRNVPKFGNYMD 149


>AT5G40840.3 | Symbols: SYN2 | Rad21/Rec8-like family protein |
            chr5:16359611-16362823 REVERSE LENGTH=678
          Length = 678

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 57/82 (69%), Gaps = 1/82 (1%)

Query: 1185 AAEGTHLENSGWSSRTRAVAKYLQTSF-DKEDRQGRKNLKLDNILAGKTRKEASRMFFET 1243
            A E   L+   WSSRTR VAK+L+ +F ++ +R+  + + L  +  G+T+KE++R+F+ET
Sbjct: 587  ADERQDLQQETWSSRTRNVAKFLEKTFLEQREREEEEKVSLLQLCRGRTQKESARLFYET 646

Query: 1244 LVLKTRDYVHVEQAEPYDNIDL 1265
            LVLKT+ YV V+Q  PY ++ L
Sbjct: 647  LVLKTKGYVEVKQNHPYSDVFL 668