Miyakogusa Predicted Gene
- Lj1g3v2840270.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2840270.2 Non Chatacterized Hit- tr|I1L681|I1L681_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56586
PE,83.87,0,seg,NULL; no description,Peptide chain release factor;
prfB: peptide chain release factor 2,Peptide ,CUFF.29595.2
(461 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G36170.2 | Symbols: HCF109, ATPRFB | high chlorophyll fluores... 650 0.0
AT5G36170.1 | Symbols: HCF109, ATPRFB | high chlorophyll fluores... 650 0.0
AT5G36170.3 | Symbols: HCF109, ATPRFB | high chlorophyll fluores... 471 e-133
AT1G56350.1 | Symbols: | Peptide chain release factor 2 | chr1:... 248 5e-66
AT3G57190.1 | Symbols: | peptide chain release factor, putative... 213 2e-55
AT3G62910.1 | Symbols: APG3 | Peptide chain release factor 1 | c... 154 1e-37
AT2G47020.1 | Symbols: | Peptide chain release factor 1 | chr2:... 132 5e-31
AT2G47020.2 | Symbols: | Peptide chain release factor 1 | chr2:... 105 7e-23
AT1G33330.1 | Symbols: | Class I peptide chain release factor |... 55 1e-07
>AT5G36170.2 | Symbols: HCF109, ATPRFB | high chlorophyll
fluorescent 109 | chr5:14236083-14237974 REVERSE
LENGTH=455
Length = 455
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/398 (77%), Positives = 355/398 (89%), Gaps = 3/398 (0%)
Query: 64 ENQLSVGEGEDTDTTEWALQAFYSLRKDVEITSQRVEEIRESSGIXXXXXXXXXXXXKAS 123
E+ LSV + +T+EW +Q FY+LRKDVEI S RVEEIR S+ + KA+
Sbjct: 61 ESNLSVSN--ENETSEWLMQDFYTLRKDVEIASARVEEIRASANLQQLEQEITNLESKAT 118
Query: 124 ATSFWDNRAKAQETLSTLSDVKDKINLLAEFKTQVEDAETIVKLTEEMESSIDRALLEEA 183
TSFWD+R KAQETLS+L+D+KD++ LL+EFKT VEDAETIVKLTEEM+S+ D +LLEEA
Sbjct: 119 DTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDST-DVSLLEEA 177
Query: 184 TSLIKELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQ 243
+IKELNKSLD+FELTQLLSGPYDKEGAV+ ITAGAGGTDAQDWADMLLRMYMRWGEKQ
Sbjct: 178 MGIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQ 237
Query: 244 RYKTRVVERSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSG 303
RYKT+VVE S GEEAGIKSAT+E+EGRYAYGY+SGEKGTHRIVRQSPFNSKGLRQTSFSG
Sbjct: 238 RYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSG 297
Query: 304 VEVMPLLPEESLDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEER 363
VEVMPLLPEE++ +EIPEEDL+ISF+RAGGKGGQNVNKVETAVRITHIPTGV +RCTEER
Sbjct: 298 VEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEER 357
Query: 364 SQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVR 423
SQLANK +AL RLKAKL+VIAEEQRA+EIK+IRGDAVKAEWGQQIRNYVFHPYKLVKDVR
Sbjct: 358 SQLANKTRALIRLKAKLMVIAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYKLVKDVR 417
Query: 424 TGHETPDVTSVMDGELDPFIKSYLKHKFSMTMSTSGVN 461
TGHET D+TSVMDG+LDPFIK+YLKHK+++ M+++ N
Sbjct: 418 TGHETSDITSVMDGDLDPFIKAYLKHKYTLAMASAVTN 455
>AT5G36170.1 | Symbols: HCF109, ATPRFB | high chlorophyll
fluorescent 109 | chr5:14236083-14237974 REVERSE
LENGTH=456
Length = 456
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/398 (77%), Positives = 355/398 (89%), Gaps = 3/398 (0%)
Query: 64 ENQLSVGEGEDTDTTEWALQAFYSLRKDVEITSQRVEEIRESSGIXXXXXXXXXXXXKAS 123
E+ LSV + +T+EW +Q FY+LRKDVEI S RVEEIR S+ + KA+
Sbjct: 62 ESNLSVSN--ENETSEWLMQDFYTLRKDVEIASARVEEIRASANLQQLEQEITNLESKAT 119
Query: 124 ATSFWDNRAKAQETLSTLSDVKDKINLLAEFKTQVEDAETIVKLTEEMESSIDRALLEEA 183
TSFWD+R KAQETLS+L+D+KD++ LL+EFKT VEDAETIVKLTEEM+S+ D +LLEEA
Sbjct: 120 DTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDST-DVSLLEEA 178
Query: 184 TSLIKELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQ 243
+IKELNKSLD+FELTQLLSGPYDKEGAV+ ITAGAGGTDAQDWADMLLRMYMRWGEKQ
Sbjct: 179 MGIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQ 238
Query: 244 RYKTRVVERSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSG 303
RYKT+VVE S GEEAGIKSAT+E+EGRYAYGY+SGEKGTHRIVRQSPFNSKGLRQTSFSG
Sbjct: 239 RYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSG 298
Query: 304 VEVMPLLPEESLDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEER 363
VEVMPLLPEE++ +EIPEEDL+ISF+RAGGKGGQNVNKVETAVRITHIPTGV +RCTEER
Sbjct: 299 VEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEER 358
Query: 364 SQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVR 423
SQLANK +AL RLKAKL+VIAEEQRA+EIK+IRGDAVKAEWGQQIRNYVFHPYKLVKDVR
Sbjct: 359 SQLANKTRALIRLKAKLMVIAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYKLVKDVR 418
Query: 424 TGHETPDVTSVMDGELDPFIKSYLKHKFSMTMSTSGVN 461
TGHET D+TSVMDG+LDPFIK+YLKHK+++ M+++ N
Sbjct: 419 TGHETSDITSVMDGDLDPFIKAYLKHKYTLAMASAVTN 456
>AT5G36170.3 | Symbols: HCF109, ATPRFB | high chlorophyll
fluorescent 109 | chr5:14236297-14237974 REVERSE
LENGTH=391
Length = 391
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/298 (76%), Positives = 261/298 (87%), Gaps = 3/298 (1%)
Query: 64 ENQLSVGEGEDTDTTEWALQAFYSLRKDVEITSQRVEEIRESSGIXXXXXXXXXXXXKAS 123
E+ LSV + +T+EW +Q FY+LRKDVEI S RVEEIR S+ + KA+
Sbjct: 62 ESNLSVSN--ENETSEWLMQDFYTLRKDVEIASARVEEIRASANLQQLEQEITNLESKAT 119
Query: 124 ATSFWDNRAKAQETLSTLSDVKDKINLLAEFKTQVEDAETIVKLTEEMESSIDRALLEEA 183
TSFWD+R KAQETLS+L+D+KD++ LL+EFKT VEDAETIVKLTEEM+S+ D +LLEEA
Sbjct: 120 DTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDST-DVSLLEEA 178
Query: 184 TSLIKELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQ 243
+IKELNKSLD+FELTQLLSGPYDKEGAV+ ITAGAGGTDAQDWADMLLRMYMRWGEKQ
Sbjct: 179 MGIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQ 238
Query: 244 RYKTRVVERSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSG 303
RYKT+VVE S GEEAGIKSAT+E+EGRYAYGY+SGEKGTHRIVRQSPFNSKGLRQTSFSG
Sbjct: 239 RYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSG 298
Query: 304 VEVMPLLPEESLDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTE 361
VEVMPLLPEE++ +EIPEEDL+ISF+RAGGKGGQNVNKVETAVRITHIPTGV +RCT+
Sbjct: 299 VEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTD 356
>AT1G56350.1 | Symbols: | Peptide chain release factor 2 |
chr1:21094840-21097826 FORWARD LENGTH=482
Length = 482
Score = 248 bits (634), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 190/323 (58%), Gaps = 3/323 (0%)
Query: 125 TSFWDNRAKAQETLSTLSDVKDKINLLAEFKTQVEDAETIVKLTEEMESSIDRALLEEAT 184
+ WD+ A + + K+ + F+ ++ + ++KL +E D L E
Sbjct: 152 SDLWDDPTHAGKISREHGSLTGKMKGVMTFERELLEHIDMLKLAKEEN---DSELESETL 208
Query: 185 SLIKELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQR 244
+ ++ + EL LLS D I + AGAGGT++ DWA M++ MY W ++++
Sbjct: 209 KALIDMRRVSKEKELEALLSADNDPCSCYIEVQAGAGGTESNDWAAMVMEMYKTWAQRRK 268
Query: 245 YKTRVVERSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGV 304
+ VV+ +PGE AGIK ATI+V G YAYGY E G HR+VR SPF+S R TSF+ V
Sbjct: 269 FSVTVVDEAPGEIAGIKRATIKVNGEYAYGYAKAEVGVHRLVRISPFDSGKRRHTSFAAV 328
Query: 305 EVMPLLPEESLDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEERS 364
V+P+L + S VEI + DL I R+GG GGQ+ N ++AVRI HIPTG+T C ERS
Sbjct: 329 AVIPILGDGSTRVEINDSDLRIERFRSGGAGGQHANTTDSAVRIVHIPTGITATCQNERS 388
Query: 365 QLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRT 424
Q +NK A++ L+++L + ++ + Q + WG QIR YV HPY++VKD+RT
Sbjct: 389 QHSNKASAMAVLQSRLDQLEMARQTAMNAQHTQSLTEISWGNQIRTYVLHPYRMVKDLRT 448
Query: 425 GHETPDVTSVMDGELDPFIKSYL 447
+E D SV++G+LD FI S+L
Sbjct: 449 NYEVSDPDSVLEGDLDGFILSFL 471
>AT3G57190.1 | Symbols: | peptide chain release factor, putative |
chr3:21166468-21168198 FORWARD LENGTH=406
Length = 406
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 198/329 (60%), Gaps = 15/329 (4%)
Query: 127 FWDNRAKAQETLSTLSDVKDKINLLAEFKTQVEDAETIVKLTEEMESSIDRALLEEATSL 186
WD+ AK+ E L L+D ++ L + K + E+A+ I++L E +ID +L E+A
Sbjct: 88 LWDDPAKSDEILLKLADRAKAVDSLKDLKYKAEEAKLIIQLGEM--DAIDYSLFEQAYDS 145
Query: 187 IKELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQRYK 246
++++SL +E+++LL YD EGA + I +G+ G +Q W + ++ MY++W E+
Sbjct: 146 SLDVSRSLHHYEMSKLLRDQYDAEGACMIIKSGSPGAKSQIWTEQVVSMYIKWAERLGQN 205
Query: 247 TRVVERSP--GEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGV 304
RV E+ ++G+ SATIE E +AYGYL GE+G HR++ S N + + V
Sbjct: 206 ARVAEKCSLLSNKSGVSSATIEFEFEFAYGYLLGERGVHRLIISSTSN-----EECSATV 260
Query: 305 EVMPLLPEESLDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEERS 364
+++PL S D E+ E DL +S+ ++ E V I HIP+GVTL+ + ER+
Sbjct: 261 DIIPLFLRASPDFEVKEGDLIVSYP-----AKEDHKIAENMVCIHHIPSGVTLQSSGERN 315
Query: 365 QLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRT 424
+ AN+IKAL+RLKAKLLVIA+EQ+ S++ +I + E ++ R+YV +K+V D +T
Sbjct: 316 RFANRIKALNRLKAKLLVIAKEQKVSDVNKIDSKNI-LEPREETRSYVSKGHKMVVDRKT 374
Query: 425 GHETPDVTSVMDGELDPFIKSYLKHKFSM 453
G E D+ SV+DG + P + +++ + S+
Sbjct: 375 GLEILDLKSVLDGNIGPLLGAHISMRRSI 403
>AT3G62910.1 | Symbols: APG3 | Peptide chain release factor 1 |
chr3:23257661-23260386 REVERSE LENGTH=422
Length = 422
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/328 (31%), Positives = 175/328 (53%), Gaps = 25/328 (7%)
Query: 130 NRAKAQETLSTLSDVKDKINLLAEFK---TQVEDAETIVKLTEEMESSIDRALLE----E 182
N+++ Q+ ++S++ + + + FK Q+ +++ + K E+ D + E E
Sbjct: 83 NQSEYQKLAQSMSELDEVVTVFRRFKDCEKQLLESKVLAK-----EAGDDEDMAEMIGSE 137
Query: 183 ATSLIKELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEK 242
SL KE+ + + ++ L S P D ++ + AG GG +A W L+RMY R+ E+
Sbjct: 138 INSLTKEIEELEKQLKVLLLPSDPLDARNILLEVRAGTGGDEAAIWTGDLVRMYQRYSER 197
Query: 243 QRYKTRVVERSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFS 302
+K +V S E G K+ +E++G Y L E G HR+ R ++G TS +
Sbjct: 198 SSWKFSMVSCSEAEHGGYKTCVMEIKGNRVYSKLKYESGVHRVQRVPQTETQGRVHTSTA 257
Query: 303 GVEVMPLLPEESLDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEE 362
V +MP E ++V I +D+E++ +R+GG GGQNVNKVETA+ + H P+G+ + CTEE
Sbjct: 258 TVAIMPEADE--VEVVIDPKDIELTSARSGGAGGQNVNKVETAIDLFHKPSGIRIFCTEE 315
Query: 363 RSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQIRNYVFHPYKLVKD 421
R+Q+ NK +A L+AKL I ++ +I+ R V ++IR Y + KD
Sbjct: 316 RTQIRNKARAFQLLRAKLYEIKVREQQEKIRNERKSQVGTGARSEKIRTYNY------KD 369
Query: 422 VR-TGHETP---DVTSVMDGELDPFIKS 445
R T H +T+ +DG L+ +++
Sbjct: 370 SRVTDHRLKMNFALTTFLDGALEDAVQA 397
>AT2G47020.1 | Symbols: | Peptide chain release factor 1 |
chr2:19320090-19322279 REVERSE LENGTH=413
Length = 413
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 159/322 (49%), Gaps = 14/322 (4%)
Query: 132 AKAQETLSTLSDVKDKINLLAEFKTQVEDAETIVKLTEEMESSIDRALLE----EATSLI 187
++A + L L D IN L + +++ +++V ESS D+ +L+ E +
Sbjct: 85 SRANKELRKLRDSMLLINDLRAKQKEIDGLKSLVS-----ESSDDKDMLDLAVGELDEAV 139
Query: 188 KELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQRYKT 247
+E + + L D+ ++ + AG GG +A +A + RMY R+ +K+ +K
Sbjct: 140 EEEKRLQTLLLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKF 199
Query: 248 RVVERSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGVEVM 307
+V+ + + G K A+ + G YG L E G HR+ R G TS V ++
Sbjct: 200 DIVDITESDMKGYKEASAAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAIL 259
Query: 308 PLLPEESLDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEERSQLA 367
P E +DV++ EDL I R+GG GGQ+ N +AVRI H+PTG+ + +ERSQ
Sbjct: 260 PQADE--VDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHM 317
Query: 368 NKIKALSRLKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQIRNYVFHPYKLVKDVRTGH 426
N+ KAL L A+L I + S ++R D + + +IR Y F P V D R G
Sbjct: 318 NRAKALKVLCARLYEIERLRIQSSRSKLRSDQIGSGDRSGRIRTYNF-PQGRVTDHRVGI 376
Query: 427 ETPDVTSVMDGE-LDPFIKSYL 447
+ +M GE LD FI + L
Sbjct: 377 THHAIEDMMQGENLDMFIDALL 398
>AT2G47020.2 | Symbols: | Peptide chain release factor 1 |
chr2:19320439-19322002 REVERSE LENGTH=256
Length = 256
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 120/238 (50%), Gaps = 11/238 (4%)
Query: 132 AKAQETLSTLSDVKDKINLLAEFKTQVEDAETIVKLTEEMESSIDRALLE----EATSLI 187
++A + L L D IN L + +++ +++V ESS D+ +L+ E +
Sbjct: 20 SRANKELRKLRDSMLLINDLRAKQKEIDGLKSLVS-----ESSDDKDMLDLAVGELDEAV 74
Query: 188 KELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQRYKT 247
+E + + L D+ ++ + AG GG +A +A + RMY R+ +K+ +K
Sbjct: 75 EEEKRLQTLLLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKF 134
Query: 248 RVVERSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGVEVM 307
+V+ + + G K A+ + G YG L E G HR+ R G TS V ++
Sbjct: 135 DIVDITESDMKGYKEASAAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAIL 194
Query: 308 PLLPEESLDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEERSQ 365
P E +DV++ EDL I R+GG GGQ+ N +AVRI H+PTG+ + +ERSQ
Sbjct: 195 PQADE--VDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQ 250
>AT1G33330.1 | Symbols: | Class I peptide chain release factor |
chr1:12084968-12086238 FORWARD LENGTH=257
Length = 257
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 330 RAGGKGGQNVNKVETAVRITHIPTGVTLRCTEERSQLANKIKALSRLKAKLLV 382
R G GGQ+ NK ++AVR+ H+PTG+ + E+RSQ N+ AL+RL+ L +
Sbjct: 104 RVSGPGGQHRNKRDSAVRLKHLPTGIVAQAVEDRSQHKNRASALNRLRTLLAI 156