Miyakogusa Predicted Gene

Lj1g3v2838160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2838160.1 Non Chatacterized Hit- tr|D8TQZ1|D8TQZ1_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,52.05,4e-17,FAMILY NOT NAMED,NULL;
PspA_IM30,PspA/IM30,CUFF.29584.1
         (155 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65260.1 | Symbols: PTAC4, VIPP1 | plastid transcriptionally ...   147   2e-36

>AT1G65260.1 | Symbols: PTAC4, VIPP1 | plastid transcriptionally
           active 4 | chr1:24236329-24240428 FORWARD LENGTH=330
          Length = 330

 Score =  147 bits (372), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/148 (52%), Positives = 104/148 (70%), Gaps = 17/148 (11%)

Query: 3   LSMKATPLTG----------SCFVSNSIRPSTHP--PFKSSFLHYGGRALEVPGIRVSYS 50
           +++KA+P+TG          S   ++S RP +    P ++SF      AL V  +R++  
Sbjct: 1   MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACD 60

Query: 51  NRLKCQCHGGGGLGAHMNIFSRFARVIKSYANAIISSFEDPEKILEQAVLDMNNDLVKVR 110
           NRL+C  HG     A MN+F RF+RV+KSYANA+ISSFEDPEKILEQ V++MN+DL K+R
Sbjct: 61  NRLRCNGHG-----ATMNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMR 115

Query: 111 QATAQVLASQKQLESKYTAIQKASDDWY 138
           QATAQVLASQKQL++KY A Q++SDDWY
Sbjct: 116 QATAQVLASQKQLQNKYKAAQQSSDDWY 143