Miyakogusa Predicted Gene

Lj1g3v2823900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2823900.1 tr|Q6EJD1|Q6EJD1_PUEML Isopentenyl pyrophosphate
isomerase OS=Pueraria montana var. lobata GN=Ipi
PE,77.01,0,IPP_isom_1: isopentenyl-diphosphate
delta-isomeras,Isopentenyl-diphosphate delta-isomerase, type 1;
,CUFF.29569.1
         (179 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16440.1 | Symbols: IPP1 | isopentenyl diphosphate isomerase ...   207   3e-54
AT3G02780.1 | Symbols: IPP2, IPIAT1, IDI2 | isopentenyl pyrophos...   202   1e-52

>AT5G16440.1 | Symbols: IPP1 | isopentenyl diphosphate isomerase 1 |
           chr5:5371765-5373575 FORWARD LENGTH=291
          Length = 291

 Score =  207 bits (527), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 97/116 (83%), Positives = 107/116 (92%), Gaps = 1/116 (0%)

Query: 53  SLSSHTAMGQTPTAADAGMDAVQRRLMFDDECILVDENDRVVGHDSKYNCHLMEKIESEN 112
           S+ + +A+  T  + DAGMDAVQRRLMF+DECILVDENDRVVGHD+KYNCHLMEKIE+EN
Sbjct: 50  SVRAFSAVTMT-DSNDAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAEN 108

Query: 113 LLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLHRESELIEENSLGI 168
           LLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPL+RESELIEEN LG+
Sbjct: 109 LLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGV 164


>AT3G02780.1 | Symbols: IPP2, IPIAT1, IDI2 | isopentenyl
           pyrophosphate:dimethylallyl pyrophosphate isomerase 2 |
           chr3:602578-604648 REVERSE LENGTH=284
          Length = 284

 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/113 (84%), Positives = 103/113 (91%), Gaps = 3/113 (2%)

Query: 56  SHTAMGQTPTAADAGMDAVQRRLMFDDECILVDENDRVVGHDSKYNCHLMEKIESENLLH 115
           S TAM  T    DAGMDAVQRRLMF+DECILVDE DRVVGHDSKYNCHLME IE++NLLH
Sbjct: 48  SGTAMTDT---KDAGMDAVQRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLH 104

Query: 116 RAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLHRESELIEENSLGI 168
           RAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPL+RESELI++N+LG+
Sbjct: 105 RAFSVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDNALGV 157