Miyakogusa Predicted Gene

Lj1g3v2811590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2811590.1 Non Chatacterized Hit- tr|G1U5U2|G1U5U2_RABIT
Uncharacterized protein OS=Oryctolagus cuniculus
GN=IP,33.18,8e-19,RVT_2,Reverse transcriptase, RNA-dependent DNA
polymerase; IMPORTIN 11 (IMP11) (RAN-BINDING PROTEIN ,gene.g33630.t1.1
         (306 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08960.1 | Symbols:  | ARM repeat superfamily protein | chr3:...   270   8e-73

>AT3G08960.1 | Symbols:  | ARM repeat superfamily protein |
           chr3:2730405-2736762 REVERSE LENGTH=1010
          Length = 1010

 Score =  270 bits (691), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 134/208 (64%), Positives = 150/208 (72%), Gaps = 1/208 (0%)

Query: 49  HAFSAQDYVALGLVFCF-FSKITDPEPYLLSFEQFLIQCMVMIKNILECKEYKPTLTGRV 107
           H FS  D  AL +V  F  +KITDPE  LL FE F IQCMVM+K++LECKEYKP+ TGRV
Sbjct: 304 HPFSFGDKCALPVVVDFCLNKITDPEQALLPFEDFFIQCMVMVKSVLECKEYKPSRTGRV 363

Query: 108 MDENGVTLEQIKKNIXXXXXXXXXXXXPNERIVLLCNVLIQRYFVLTASDLEEWYRNPES 167
           MD+NG T EQ KKN             PNERIVLLCNVL++RYFVLTASDLEEWY+NPES
Sbjct: 364 MDDNGDTFEQRKKNASNTVGGIVSSLLPNERIVLLCNVLVRRYFVLTASDLEEWYQNPES 423

Query: 168 FHHEQDMVQWTEKLRPCAEALYIVLFENYSQLLCPVVGSILQEAMKSCPTSVTENTPXXX 227
           FHHEQDM+QWTEKLRPCAEALY+VLFENYSQLL P+V SILQEAM +CP SVTE TP   
Sbjct: 424 FHHEQDMIQWTEKLRPCAEALYMVLFENYSQLLGPIVVSILQEAMNNCPPSVTEITPALL 483

Query: 228 XXXXXXXXXXXXXXXXSNYLSFKDWPQG 255
                           SNYL+F+DW  G
Sbjct: 484 LKDAAYAATAYVYYELSNYLNFRDWFNG 511