Miyakogusa Predicted Gene

Lj1g3v2809470.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2809470.1 tr|B9GR88|B9GR88_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_645504 PE=4
SV=1,37.01,0.00000000000003,coiled-coil,NULL;
seg,NULL,gene.g33621.t1.1
         (155 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13230.1 | Symbols:  | Late embryogenesis abundant protein (L...    60   6e-10

>AT4G13230.1 | Symbols:  | Late embryogenesis abundant protein (LEA)
           family protein | chr4:7675841-7676629 REVERSE LENGTH=120
          Length = 120

 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 68  EPLQDKAYSSNAAEHINNKAKDTANQISKKAQNITEKAKQTMQEAWDSTKNNANKAADNV 127
           + + DKA  + A + +  KA + A  IS  A N+ +KAK T +EAWD  K+   K  D V
Sbjct: 35  DSVCDKA--TEAQQKVAKKADEGAQTISDAAGNLKDKAKNTAEEAWDKVKDTTEKIKDTV 92

Query: 128 LGKTQKSAEYVKENAETVKENMNSKN 153
            GKT+++ E +K  A+TV+ +MN+KN
Sbjct: 93  TGKTEETKESIKATAKTVERSMNTKN 118