Miyakogusa Predicted Gene
- Lj1g3v2808080.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2808080.1 tr|Q2HV80|Q2HV80_MEDTR Homeodomain-like
OS=Medicago truncatula GN=MtrDRAFT_AC148994g9v2 PE=4
SV=1,59.96,0,seg,NULL,CUFF.29511.1
(951 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 84 5e-16
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 620 HKVVLDKIVNRARALNERGSFQENLKRNPFIWSEEELDFLWIGVRRHGRGNWVAMLRDPR 679
H+ VL+ I+ R + G Q+ R WSE+ELD LWIG+RRHG GNW +LRDPR
Sbjct: 1677 HRKVLENIM--LRTGSGIGHVQKKKTRVD-AWSEDELDSLWIGIRRHGYGNWETILRDPR 1733
Query: 680 LRFSPLRAPWDLAERWEDEQIKL 702
L+FS + P LA RWE+EQ K
Sbjct: 1734 LKFSKFKTPEYLAARWEEEQRKF 1756