Miyakogusa Predicted Gene

Lj1g3v2808080.1
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2808080.1 tr|Q2HV80|Q2HV80_MEDTR Homeodomain-like
OS=Medicago truncatula GN=MtrDRAFT_AC148994g9v2 PE=4
SV=1,59.96,0,seg,NULL,CUFF.29511.1
         (951 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr...    84   5e-16

>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
            chr5:18083659-18092162 REVERSE LENGTH=2223
          Length = 2223

 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 620  HKVVLDKIVNRARALNERGSFQENLKRNPFIWSEEELDFLWIGVRRHGRGNWVAMLRDPR 679
            H+ VL+ I+   R  +  G  Q+   R    WSE+ELD LWIG+RRHG GNW  +LRDPR
Sbjct: 1677 HRKVLENIM--LRTGSGIGHVQKKKTRVD-AWSEDELDSLWIGIRRHGYGNWETILRDPR 1733

Query: 680  LRFSPLRAPWDLAERWEDEQIKL 702
            L+FS  + P  LA RWE+EQ K 
Sbjct: 1734 LKFSKFKTPEYLAARWEEEQRKF 1756