Miyakogusa Predicted Gene

Lj1g3v2807690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2807690.1 Non Chatacterized Hit- tr|K4AZR0|K4AZR0_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,51.33,3e-18,coiled-coil,NULL; seg,NULL,CUFF.29499.1
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46180.1 | Symbols: GC4 | golgin candidate 4 | chr2:18967482-...   100   3e-22
AT3G61570.1 | Symbols: GC3, GDAP1 | GRIP-related ARF-binding dom...    98   9e-22

>AT2G46180.1 | Symbols: GC4 | golgin candidate 4 |
           chr2:18967482-18971260 REVERSE LENGTH=725
          Length = 725

 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 70/112 (62%), Gaps = 13/112 (11%)

Query: 1   MWGTIANLKENLNKIALDVHFXXXXXXGVGIPPYGSPAHGESTPVSDRRNSYGHTRARSI 60
           MW ++ANLKENLNKIA DVH          +  YGS   G     +DRRNS G       
Sbjct: 1   MWSSVANLKENLNKIAHDVH-DDDEDDDEDLTIYGSTNGG-----TDRRNSNGFR----Y 50

Query: 61  PRSPASNGTSTTDPPYASEIEQYKAEIKRLQASEAEIKALSINYAALLKEKE 112
            RSP +NG    + P   EIE+YKAEI +LQ SE+EIKALS+NYAALLKEKE
Sbjct: 51  SRSPMANGF---ESPVNPEIERYKAEINKLQKSESEIKALSVNYAALLKEKE 99


>AT3G61570.1 | Symbols: GC3, GDAP1 | GRIP-related ARF-binding
           domain-containing protein 1 | chr3:22779637-22783642
           REVERSE LENGTH=712
          Length = 712

 Score = 98.2 bits (243), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 73/112 (65%), Gaps = 11/112 (9%)

Query: 1   MWGTIANLKENLNKIALDVHFXXXXXXGVGIPPYGSPAHGESTPVSDRRNSYGHTRARSI 60
           MW +I N+K NL+KI LDVH          +  YGS A+G S   SDRRNS G    RS+
Sbjct: 1   MWSSIENMKANLHKIVLDVH--EDDEEEDDLHKYGS-ANGVSN--SDRRNSSGF---RSV 52

Query: 61  PRSPASNGTSTTDPPYASEIEQYKAEIKRLQASEAEIKALSINYAALLKEKE 112
            R   SNG    + P   EIE+YKAEIK+LQ SE++IKALS+NYAALL+EKE
Sbjct: 53  SRYSISNGI---ESPAHHEIERYKAEIKKLQESESDIKALSVNYAALLREKE 101