Miyakogusa Predicted Gene

Lj1g3v2741270.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2741270.2 Non Chatacterized Hit- tr|I1LCX7|I1LCX7_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,37.09,3e-19,seg,NULL;
coiled-coil,NULL,CUFF.29729.2
         (181 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42340.1 | Symbols: PUB15 | Plant U-Box 15 | chr5:16928086-16...   162   2e-40
AT3G46510.1 | Symbols: PUB13, ATPUB13 | plant U-box 13 | chr3:17...   102   1e-22
AT2G28830.1 | Symbols: PUB12, AtPUB12 | PLANT U-BOX 12 | chr2:12...    84   5e-17
AT3G54850.1 | Symbols: ATPUB14, PUB14 | plant U-box 14 | chr3:20...    67   5e-12
AT1G29340.1 | Symbols: PUB17, ATPUB17 | plant U-box 17 | chr1:10...    52   2e-07

>AT5G42340.1 | Symbols: PUB15 | Plant U-Box 15 |
           chr5:16928086-16930367 REVERSE LENGTH=660
          Length = 660

 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/180 (44%), Positives = 124/180 (68%), Gaps = 3/180 (1%)

Query: 1   MLPLMEDLRDLQPPVPENGVVWLVNXXXXXXXXXXXXXXXSQGSKIHLALESEAVMIRFQ 60
           ++P ++++R  + P  ++   +L                 S GSKI++AL+ E +M RF 
Sbjct: 88  LIPFLDEIRGFESPSCKH---FLNRLRKVFLAAKKLLETCSNGSKIYMALDGETMMTRFH 144

Query: 61  NVYEKLSQAFDGVPADELGISDEVQEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDE 120
           ++YEKL++     P DEL IS + +++++ +  QL++A+RRTDTQDIELA+DMMVVFS  
Sbjct: 145 SIYEKLNRVLVKAPFDELMISGDAKDEIDSLCKQLKKAKRRTDTQDIELAVDMMVVFSKT 204

Query: 121 DDRNADSAIVERLAKKLELHTVEDLEVETVAVRNLATERKGQQADSTQRIIKLLNKFKQI 180
           D RNADSAI+ERLAKKLEL T++DL+ ET+A+++L  ++ G   ++ Q II+LLNKFK++
Sbjct: 205 DPRNADSAIIERLAKKLELQTIDDLKTETIAIQSLIQDKGGLNIETKQHIIELLNKFKKL 264


>AT3G46510.1 | Symbols: PUB13, ATPUB13 | plant U-box 13 |
           chr3:17124106-17126539 REVERSE LENGTH=660
          Length = 660

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 99/182 (54%), Gaps = 3/182 (1%)

Query: 1   MLPLMEDLRDLQPPVPENGVVWLVNXXXXXXXXXXXXXXXSQGSKIHLALESEAVMIRFQ 60
           ++P+ E++R+   P+ E+ +  L+N               SQGSKI+L +E E V  +  
Sbjct: 43  LVPMFEEIRESNEPISEDTLKTLMNLKEAMCSAKDYLKFCSQGSKIYLVMEREQVTSKLM 102

Query: 61  NVYEKLSQAFDGVPADELGISDEVQEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDE 120
            V  KL Q+   +P +EL ISDEV+EQ+EL+  Q RRA+ R D  D EL  D+  + +  
Sbjct: 103 EVSVKLEQSLSQIPYEELDISDEVREQVELVLSQFRRAKGRVDVSDDELYEDLQSLCNKS 162

Query: 121 DDRNADSAIVERLAKKLELHTVEDLEVETVAVRNLATERKGQQADSTQR---IIKLLNKF 177
            D +A   ++ER+AKKL L  + DL  E+VA+  +     G   ++ +    ++K++  F
Sbjct: 163 SDVDAYQPVLERVAKKLHLMEIPDLAQESVALHEMVASSGGDVGENIEEMAMVLKMIKDF 222

Query: 178 KQ 179
            Q
Sbjct: 223 VQ 224


>AT2G28830.1 | Symbols: PUB12, AtPUB12 | PLANT U-BOX 12 |
           chr2:12367001-12370608 REVERSE LENGTH=962
          Length = 962

 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 101/179 (56%), Gaps = 5/179 (2%)

Query: 3   PLMEDLRDLQPPVPENGVVWLVNXXXXXXXXXXXXXXXSQGSKIHLALESEAVMIRFQNV 62
           P++E++RD Q    E  V  L++               S  SKI+L LE + VM++FQ V
Sbjct: 46  PMLEEIRDNQESSSEV-VNALLSVKQSLLHAKDLLSFVSHVSKIYLVLERDQVMVKFQKV 104

Query: 63  YEKLSQAFDGVPADELGISDEVQEQLELMHVQLRRA--RRRTDTQDIELAMDMMVVFSDE 120
              L QA   +P + L ISDE++EQ+EL+ VQLRR+  +R  D  D EL  D++ ++S  
Sbjct: 105 TSLLEQALSIIPYENLEISDELKEQVELVLVQLRRSLGKRGGDVYDDELYKDVLSLYSGR 164

Query: 121 DDRNADSAIVERLAKKLELHTVEDLEVETVAVRNLATERKG-QQADSTQRIIKLLNKFK 178
                +S +V R+A+KL+L T+ DL  E++A+ ++ +   G    +S +++  +L K K
Sbjct: 165 GSV-MESDMVRRVAEKLQLMTITDLTQESLALLDMVSSSGGDDPGESFEKMSMVLKKIK 222


>AT3G54850.1 | Symbols: ATPUB14, PUB14 | plant U-box 14 |
           chr3:20321524-20323848 FORWARD LENGTH=632
          Length = 632

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 82/135 (60%), Gaps = 3/135 (2%)

Query: 43  GSKIHLALESEAVMIRFQNVYEKLSQAFDGVPADELGISDEVQEQLELMHVQLRRARRRT 102
           GSK+    + ++++ +F+++  ++  A   +P +++ +S+EV+EQ++L+H Q +RA+ R 
Sbjct: 89  GSKLFQLFDRDSLVEKFRDMTVEIEAALSQIPYEKIEVSEEVREQVQLLHFQFKRAKERW 148

Query: 103 DTQDIELAMDMMVVFSDEDDRNADSAIVERLAKKLELHTVEDLEVETVAVRNLATERKGQ 162
           +  D++L+ D+ +    E+  + D  I++RL+++L+L T+++L+ E+ A+        G 
Sbjct: 149 EESDLQLSHDLAMA---ENVMDPDPIILKRLSQELQLTTIDELKKESHAIHEYFLSYDGD 205

Query: 163 QADSTQRIIKLLNKF 177
             D  +R+  LL   
Sbjct: 206 PDDCFERMSSLLKNL 220


>AT1G29340.1 | Symbols: PUB17, ATPUB17 | plant U-box 17 |
           chr1:10264412-10266601 FORWARD LENGTH=729
          Length = 729

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 45/69 (65%)

Query: 41  SQGSKIHLALESEAVMIRFQNVYEKLSQAFDGVPADELGISDEVQEQLELMHVQLRRARR 100
           +Q SK+ L L++ ++   F ++ +++S   D +P ++LG+SD+++EQ+EL+  Q R+AR 
Sbjct: 125 AQSSKLWLLLQNPSISGYFHDLNQEISTLLDVLPVNDLGLSDDIREQIELLQRQSRKARL 184

Query: 101 RTDTQDIEL 109
             D  D  L
Sbjct: 185 YIDKNDESL 193