Miyakogusa Predicted Gene

Lj1g3v2682540.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2682540.1 Non Chatacterized Hit- tr|I3SG84|I3SG84_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,94.26,0,Ribosomal_S8e,Ribosomal protein S8e/ribosomal biogenesis
NSA2; SUBFAMILY NOT NAMED,NULL; FAMILY NOT ,CUFF.29416.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06360.1 | Symbols:  | Ribosomal protein S8e family protein |...   226   5e-60

>AT5G06360.1 | Symbols:  | Ribosomal protein S8e family protein |
           chr5:1944835-1946512 FORWARD LENGTH=260
          Length = 260

 Score =  226 bits (575), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 106/117 (90%), Positives = 113/117 (96%)

Query: 8   RVRPVAEYEMFKVVRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKAH 67
           +VRPVAE EMF+V+R+GKRKTKQWKRMVTKATFVGP FTRKPPKYERFIRP+GLRFTKAH
Sbjct: 123 KVRPVAEDEMFRVIRSGKRKTKQWKRMVTKATFVGPAFTRKPPKYERFIRPSGLRFTKAH 182

Query: 68  VTHPELKCTFNLEIIGVKKNPNGPMYTSLGVMTKGTIIEVNCSELGLVTPAGKVVWG 124
           VTHPELKCTF LEIIG+KKNPNGPMYTSLGVMT+GTIIEVN SELGLVTPAGKVVWG
Sbjct: 183 VTHPELKCTFCLEIIGIKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWG 239