Miyakogusa Predicted Gene

Lj1g3v2671480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2671480.1 Non Chatacterized Hit- tr|C5WXX6|C5WXX6_SORBI
Putative uncharacterized protein Sb01g047050
OS=Sorghu,39.63,0.000000000000001,seg,NULL,CUFF.29412.1
         (240 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46000.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   170   6e-43

>AT2G46000.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system; EXPRESSED IN: 24 plant structures;
           EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
           DOMAIN/s: Mesoderm development candidate 2
           (InterPro:IPR019330); Has 31 Blast hits to 31 proteins
           in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5;
           Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr2:18921194-18922047 REVERSE
           LENGTH=208
          Length = 208

 Score =  170 bits (431), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 88/173 (50%), Positives = 117/173 (67%), Gaps = 6/173 (3%)

Query: 65  AGKRKVHITXXXXXXXXXXXXXGWKEWGQKPA-PSF-PPADLNKMDPSQIQEELAKRHTG 122
           A KR++ I+              WKEWG+K   P F PP D   M   QIQEE+AKR  G
Sbjct: 31  ATKRRIEISDDLDDVEDNEEDESWKEWGKKATTPEFDPPPDFTNMGFDQIQEEMAKRTFG 90

Query: 123 PVIGFVKLRVGVRRTPDMVAELAMKWTHVLRTGALGIKFMGVDLNTVMFNMESMKDLEEL 182
            V+GFVKLR+GV RT D+V ++AMKWT VLRTG +G++FM VD +TVMFNM++ K + EL
Sbjct: 91  TVVGFVKLRLGVPRTKDVVIDIAMKWTKVLRTGGIGVRFMAVDRSTVMFNMQNGKLVTEL 150

Query: 183 KEYILDQSEAYEIKMGEQFFRRPGDPPLDEVIQKSKDEKGKTENAEPEEVDGN 235
           +E++L Q EAYE+K+G+Q FRRPGDPP ++V  K + E+ K    + E+ DGN
Sbjct: 151 REFVLSQEEAYEVKIGKQEFRRPGDPPFEDVFDKFQAEQRK----DHEDGDGN 199